NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	RX583_RS13875	Genome accession	NZ_CP136402
Coordinates	2641914..2642531 (-)	Length	205 a.a.
NCBI ID	WP_004398514.1	Uniprot ID	A0AAE2SLR2
Organism	Bacillus subtilis subsp. subtilis str. 168
Function	dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2636914..2647531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RX583_RS13845 (RX583_13845)	rpsT	2637216..2637482 (+)	267	WP_003229989.1	30S ribosomal protein S20	-
RX583_RS13850 (RX583_13850)	holA	2637497..2638540 (-)	1044	WP_003229987.1	DNA polymerase III subunit delta	-
RX583_RS13855 (RX583_13855)	-	2638580..2638729 (-)	150	WP_003229985.1	hypothetical protein	-
RX583_RS13860 (RX583_13860)	yqzM	2638770..2638904 (+)	135	WP_003229983.1	YqzM family protein	-
RX583_RS13865 (RX583_13865)	comEC	2638944..2641274 (-)	2331	WP_009967776.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
RX583_RS13870 (RX583_13870)	comEB	2641278..2641847 (-)	570	WP_003229978.1	ComE operon protein 2	-
RX583_RS13875 (RX583_13875)	comEA	2641914..2642531 (-)	618	WP_004398514.1	competence protein ComEA	Machinery gene
RX583_RS13880 (RX583_13880)	comER	2642615..2643436 (+)	822	WP_004398597.1	late competence protein ComER	-
RX583_RS13885 (RX583_13885)	yqeM	2643502..2644245 (-)	744	WP_003229973.1	class I SAM-dependent DNA methyltransferase	-
RX583_RS13890 (RX583_13890)	rsfS	2644242..2644598 (-)	357	WP_003229971.1	ribosome silencing factor	-
RX583_RS13895 (RX583_13895)	yqeK	2644616..2645176 (-)	561	WP_004399059.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
RX583_RS13900 (RX583_13900)	nadD	2645166..2645735 (-)	570	WP_004398676.1	nicotinate-nucleotide adenylyltransferase	-
RX583_RS13905 (RX583_13905)	yhbY	2645747..2646037 (-)	291	WP_003226133.1	ribosome assembly RNA-binding protein YhbY	-
RX583_RS13910 (RX583_13910)	aroE	2646031..2646873 (-)	843	WP_003229967.1	shikimate dehydrogenase	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21769.45 Da Isoelectric Point: 4.7220

                                >NTDB_id=890706 RX583_RS13875 WP_004398514.1 2641914..2642531(-) (comEA) [Bacillus subtilis subsp. subtilis str. 168]

MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT

GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV

GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide

Download Length: 618 bp

                                >NTDB_id=890706 RX583_RS13875 WP_004398514.1 2641914..2642531(-) (comEA) [Bacillus subtilis subsp. subtilis str. 168]

ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT

GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA

ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA

GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA

GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG

TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG

GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAGGAAAACGGTCGTTTCCAAACAATTGAAGATATCACTAAGGT

TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
comEA	Staphylococcus aureus MW2	37.273	100	0.4
comEA	Staphylococcus aureus N315	36.364	100	0.39

Detailed information NTG0890706