Detailed information NTG0089070

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU74_RS03290
• Genome accession: NZ_AP024883
• Coordinates: 734770..735756 (+)
• Length: 328 a.a.
• NCBI ID: WP_087480234.1
• Uniprot ID: A0A1Y6IRB0
• Organism: Vibrio mangrovi strain CECT 7927
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 729770..740756

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU74_RS03255	ftsB	729826..730107 (+)	282	WP_087480227.1	cell division protein FtsB	-
OCU74_RS03260	ispD	730108..730803 (+)	696	WP_087480228.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU74_RS03265	ispF	730820..731293 (+)	474	WP_087480229.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU74_RS03270	truD	731342..732388 (+)	1047	WP_087480230.1	tRNA pseudouridine(13) synthase TruD	-
OCU74_RS03275	surE	732392..733132 (+)	741	WP_087480231.1	5'/3'-nucleotidase SurE	-
OCU74_RS03280	-	733138..733764 (+)	627	WP_087480232.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU74_RS03285	-	733767..734687 (+)	921	WP_087480233.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCU74_RS03290	rpoS	734770..735756 (+)	987	WP_087480234.1	RNA polymerase sigma factor RpoS	Regulator
OCU74_RS03295	-	735856..736908 (-)	1053	WP_087480235.1	pectate lyase	-
OCU74_RS03300	hpxO	737422..738576 (+)	1155	WP_087480236.1	FAD-dependent urate hydroxylase HpxO	-
OCU74_RS03305	-	738685..740700 (-)	2016	WP_087480237.1	ATP-binding protein	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37749.59 Da
• Isoelectric Point: 4.5827

>NTDB_id=89070 OCU74_RS03290 WP_087480234.1 734770..735756(+) (rpoS) [Vibrio mangrovi strain CECT 7927]
MSKSNSVTKVDQFDFDSEAFDLNTLDSEVSSESTSVETREDYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIALELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESEE

Nucleotide

• Length: 987 bp

>NTDB_id=89070 OCU74_RS03290 WP_087480234.1 734770..735756(+) (rpoS) [Vibrio mangrovi strain CECT 7927]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGATCAGTTTGATTTTGATTCAGAAGCATTTGATCTCAATACATTGGATAG
TGAGGTCAGTTCTGAAAGTACTTCTGTTGAAACTCGGGAAGATTATGAAGTTACTTCTAAGAGTCTAGACGCAACTCAAC
TTTATTTAGGCGAAATCGGTTTCTCTCCTTTATTAACTGCAGAAGAAGAAATCTTGTATGCTCGTCGGGCTCTCAGAGGT
GATGAGGCTGCTCGTAAGCGGATGATTGAGAGTAACTTACGTCTCGTTGTCAAAATATCTCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTGATCGAAGAAGGTAATCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCTGAAAGAGGAT
TCCGTTTTTCAACGTATGCAACCTGGTGGATCCGGCAAACGATCGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATTCACGTTGTCAAAGAACTTAATATTTATTTGCGTACAGCTCGGGAGTTGTCACAAAAGCTAGACCATGAACC
TACGGCGGAAGAGATTGCTCTTGAGCTGGATAAACCGGTTGATGATGTCAGTAAAATGCTTCGTCTGAATGAGCGCATTA
GTTCTGTTGATACGCCGATTGGTGGTGATGGTGATAAAGCATTGTTGGATATCATTCCTGATGCCAAACACTATGATCCC
GAATATTCAACAGAAGATGATGATATCAAGTCTTCACTTCTGCACTGGTTAGATGAACTGAATCCGAAACAAAAAGAAGT
GTTGGCAAGACGCTTTGGTTTGCTCGGGTATGAACCATCTACTTTGGAAGAAGTCGGAAAAGAGATCAATTTGACGCGTG
AACGCGTTCGTCAAATTCAGGTTGAAGGTCTGCGCCGTTTAAGAGAAATTTTGCTGAAACAAGGCCTGAATATGGAATCT
TTATTCGACGTTGAAAGTGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 3 (Sigma70_r3) (168-242)

3D structure

• AlphaFold DB: A0A1Y6IRB0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.735	100	0.848