Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RX583_RS01995 Genome accession   NZ_CP136402
Coordinates   373564..374013 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 368564..379013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX583_RS01960 (RX583_01960) yckA 368715..369395 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  RX583_RS01965 (RX583_01965) yckB 369405..370268 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  RX583_RS01970 (RX583_01970) - 370430..370627 (+) 198 WP_119122841.1 hypothetical protein -
  RX583_RS01975 (RX583_01975) yckC 370646..371101 (+) 456 WP_003246356.1 RDD family protein -
  RX583_RS01980 (RX583_01980) yckD 371183..371515 (+) 333 WP_003246247.1 YckD family protein -
  RX583_RS01985 (RX583_01985) bglC 371669..373102 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  RX583_RS01990 (RX583_01990) nin/comJ 373139..373537 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  RX583_RS01995 (RX583_01995) nucA/comI 373564..374013 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  RX583_RS02000 (RX583_02000) tlpC 374181..375902 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  RX583_RS02005 (RX583_02005) hxlB 376013..376570 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  RX583_RS02010 (RX583_02010) hxlA 376576..377208 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  RX583_RS02015 (RX583_02015) hxlR 377441..377803 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=890657 RX583_RS01995 WP_003246436.1 373564..374013(-) (nucA/comI) [Bacillus subtilis subsp. subtilis str. 168]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=890657 RX583_RS01995 WP_003246436.1 373564..374013(-) (nucA/comI) [Bacillus subtilis subsp. subtilis str. 168]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1