Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Pcarn_RS20355 Genome accession   NZ_AP024882
Coordinates   1432783..1434261 (-) Length   492 a.a.
NCBI ID   WP_261836151.1    Uniprot ID   A0A0B8P4K1
Organism   Vibrio ishigakensis strain C1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427783..1439261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS20335 - 1428010..1429359 (-) 1350 WP_261836147.1 lipopolysaccharide biosynthesis protein -
  Pcarn_RS20340 - 1429364..1430488 (-) 1125 WP_261836148.1 glycosyltransferase family 4 protein -
  Pcarn_RS20345 - 1430475..1431650 (-) 1176 WP_261836149.1 glycosyltransferase family 4 protein -
  Pcarn_RS20350 - 1431755..1432786 (-) 1032 WP_261836150.1 glycosyltransferase family 4 protein -
  Pcarn_RS20355 luxO 1432783..1434261 (-) 1479 WP_261836151.1 sigma-54 dependent transcriptional regulator Regulator
  Pcarn_RS20360 - 1434298..1434648 (-) 351 WP_261836152.1 Hpt domain-containing protein -
  Pcarn_RS20365 - 1434788..1435447 (-) 660 WP_261836153.1 hypothetical protein -
  Pcarn_RS20370 - 1435450..1437516 (-) 2067 WP_261837327.1 SLBB domain-containing protein -
  Pcarn_RS20375 - 1437536..1438345 (-) 810 WP_261836154.1 OmpA family protein -
  Pcarn_RS20380 - 1438377..1438712 (-) 336 WP_261836155.1 STAS domain-containing protein -
  Pcarn_RS20385 - 1438927..1439166 (-) 240 WP_261836156.1 RNA-binding protein -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 55121.17 Da        Isoelectric Point: 5.4302

>NTDB_id=89064 Pcarn_RS20355 WP_261836151.1 1432783..1434261(-) (luxO) [Vibrio ishigakensis strain C1]
MSPRVLLVEDSTSLAILYKQYVKDEPYDLFHVETGKDAKEFINNYKPQLVILDLKLPDTTGEEILDWIMERQFQTSVIIA
TAHGSVNTAVTLLQKGAEDFLEKPIQAERLKTSVRLHLQKAKLEKLVDKLETEFDRAKFHGFIGSSLPMQAVYKTIDSVA
PTTASVFVLGESGTGKEVCAEAIHKQSKRADKPFVAINCGAIPKDLMESEIFGHVKGAYTGATSDRKGAAAQAHGGTLFL
DELCEMDLEMQKKLLRFLQLGTFTPLGGSKESKVDVRIICATNRDPLQEVAEGRFREDLYYRVHVIPIDMPALRERGKDI
TILASHFLRQYSRQDGKRFTKLSAEVERLFQGYEWPGNVRQLQNVMRNIVVLNDDTEVKLEYLPSPLNKLVNKGSTEPTA
APTEVTVNIEPAVAPVPVEQDVPATTEQVPEPIAAEPEEIEIKPMWLVERETIQQAIKHCDGNVLNAAVLLDLSPATIYR
KKQQWEAQAKEQ

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=89064 Pcarn_RS20355 WP_261836151.1 1432783..1434261(-) (luxO) [Vibrio ishigakensis strain C1]
ATGAGCCCAAGAGTTTTACTGGTAGAAGATTCCACCTCTCTGGCGATCCTCTACAAGCAGTATGTCAAGGACGAGCCCTA
CGACCTATTCCATGTTGAAACAGGTAAGGATGCCAAAGAGTTCATCAATAACTACAAGCCGCAGCTAGTTATTCTCGACC
TCAAACTCCCAGATACCACAGGCGAAGAGATCCTTGATTGGATCATGGAGCGCCAATTCCAAACCTCGGTCATCATAGCC
ACAGCCCACGGCTCGGTGAATACTGCGGTTACCCTGCTTCAAAAAGGTGCTGAAGACTTTCTCGAAAAACCAATCCAAGC
AGAGCGTCTTAAGACCTCCGTTAGATTGCACCTACAAAAAGCCAAGCTAGAAAAGCTGGTGGATAAACTCGAAACCGAGT
TTGATCGCGCCAAATTCCACGGTTTTATTGGCTCTAGCTTGCCCATGCAGGCAGTCTACAAAACCATAGATTCCGTTGCG
CCGACGACCGCAAGCGTGTTTGTATTAGGTGAGAGCGGTACCGGTAAAGAGGTATGTGCTGAAGCCATACACAAACAGAG
CAAACGCGCCGATAAACCTTTTGTCGCCATCAACTGCGGTGCAATCCCTAAAGATCTAATGGAAAGCGAGATCTTTGGTC
ACGTCAAAGGCGCTTACACCGGAGCCACCAGCGACAGGAAAGGCGCAGCGGCGCAAGCCCATGGCGGTACCCTCTTTTTG
GATGAGCTGTGCGAAATGGATCTCGAGATGCAAAAGAAACTTTTGAGGTTCCTGCAACTCGGTACCTTCACCCCCTTAGG
CGGTTCAAAAGAGTCTAAAGTGGACGTGCGTATCATCTGCGCGACCAACCGTGACCCACTGCAAGAGGTGGCCGAGGGAA
GATTTCGTGAAGACCTTTACTACCGCGTGCACGTCATTCCAATCGACATGCCTGCTCTTCGCGAGCGCGGTAAGGATATC
ACCATACTGGCCAGTCATTTCCTTCGTCAGTATTCTAGGCAGGATGGAAAACGCTTTACCAAACTGAGTGCTGAGGTTGA
ACGCCTATTTCAAGGCTATGAATGGCCGGGTAATGTTAGACAATTACAGAATGTGATGCGCAATATCGTCGTGCTTAACG
ATGATACCGAGGTGAAGCTAGAATACCTGCCATCGCCACTAAACAAACTGGTTAACAAAGGTTCAACTGAGCCTACTGCC
GCACCGACCGAAGTGACCGTTAATATTGAGCCTGCAGTGGCTCCGGTGCCGGTAGAGCAAGACGTTCCTGCCACTACTGA
ACAAGTACCAGAGCCTATTGCTGCCGAACCAGAAGAGATAGAGATTAAACCTATGTGGCTTGTTGAACGAGAAACCATAC
AGCAGGCTATCAAGCACTGCGATGGTAACGTACTAAATGCCGCAGTCCTTTTAGATCTTAGCCCCGCCACCATCTATCGC
AAAAAGCAACAGTGGGAAGCTCAGGCTAAAGAGCAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(445-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8P4K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

51.967

98.171

0.51

Multiple sequence alignment