Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   Pcarn_RS17625 Genome accession   NZ_AP024882
Coordinates   835382..836485 (+) Length   367 a.a.
NCBI ID   WP_261837233.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 830382..841485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS17580 - 830585..830983 (+) 399 WP_261837224.1 heme-binding protein -
  Pcarn_RS17585 - 831112..831735 (+) 624 WP_261837225.1 TetR/AcrR family transcriptional regulator -
  Pcarn_RS17590 - 831753..832067 (+) 315 WP_261837226.1 DUF1992 domain-containing protein -
  Pcarn_RS17595 - 832070..832669 (-) 600 WP_261837227.1 pentapeptide repeat-containing protein -
  Pcarn_RS17600 - 832742..833143 (-) 402 WP_261837228.1 hypothetical protein -
  Pcarn_RS17605 - 833358..833867 (+) 510 WP_261837229.1 hypothetical protein -
  Pcarn_RS17610 - 833919..834233 (-) 315 WP_261837230.1 DUF496 family protein -
  Pcarn_RS17615 - 834454..835110 (+) 657 WP_261837231.1 YceH family protein -
  Pcarn_RS17620 - 835110..835385 (+) 276 WP_261837232.1 GIY-YIG nuclease family protein -
  Pcarn_RS17625 luxP 835382..836485 (+) 1104 WP_261837233.1 substrate-binding domain-containing protein Regulator
  Pcarn_RS17630 - 836489..838999 (+) 2511 WP_261837234.1 LuxQ periplasmic sensor domain-containing protein -
  Pcarn_RS17635 - 839106..841322 (+) 2217 WP_261837235.1 amidase family protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 42477.15 Da        Isoelectric Point: 5.0837

>NTDB_id=89063 Pcarn_RS17625 WP_261837233.1 835382..836485(+) (luxP) [Vibrio ishigakensis strain C1]
MKWLNRLTVGFACLLPFGVVAESSLQLRDYWDYQDYLNFYPEQAKLTAEMATRVYAEPKPISAEQDKPIQIDVVYPGAQL
SDYWWRNLKALELRLQELGVDYELNQFSMRPNLDHREESRSLQQVLKNESDYLIFTLDTSQHRKFAYRVLNEGKTKLILL
NITTPIKSWEKQHPMMYVGFDHVIGTKMLASHVQTQYPDSADYGLMYYSPGYVSEVRGDTFVKKLKHQGGYELKRAYFTH
ANRESAYKATLSMFEREQELDFIYACSTDIAFGVVDALQELGKEQVVVNGWGGGDSELEALKAGELDFTVMRMADDTGIA
MAEAIKLDMEDREVPRVYSGDFKLLTKQDSVERINQLQQRAFRYSDR

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=89063 Pcarn_RS17625 WP_261837233.1 835382..836485(+) (luxP) [Vibrio ishigakensis strain C1]
ATGAAGTGGCTCAATCGCCTAACTGTGGGGTTTGCCTGTCTGCTTCCTTTTGGGGTGGTGGCAGAGTCTAGTCTTCAGCT
CAGGGATTATTGGGATTACCAAGACTACCTCAACTTTTATCCTGAGCAAGCTAAGCTCACTGCTGAGATGGCGACTCGAG
TCTATGCTGAGCCCAAACCTATCAGTGCTGAGCAAGATAAGCCCATTCAAATAGATGTGGTGTATCCCGGTGCTCAGTTA
TCGGACTATTGGTGGCGCAACCTTAAGGCACTAGAGCTTCGTTTACAGGAGCTTGGGGTCGATTATGAGCTAAACCAATT
TTCAATGAGACCTAATCTTGACCATCGCGAAGAGAGCCGTAGCTTGCAGCAGGTCCTAAAGAACGAATCTGATTATCTCA
TCTTTACGCTAGATACCAGTCAGCATCGCAAGTTTGCTTATCGAGTACTTAACGAAGGCAAAACTAAGCTGATTCTTTTG
AATATCACCACGCCAATCAAATCTTGGGAAAAGCAACATCCAATGATGTATGTAGGATTTGATCATGTGATAGGCACTAA
GATGTTGGCTTCGCACGTCCAGACCCAATACCCAGATTCTGCTGACTATGGGCTGATGTATTACTCTCCCGGCTATGTCA
GTGAGGTGAGGGGTGACACCTTTGTCAAAAAACTGAAGCACCAAGGTGGATATGAGCTTAAAAGGGCCTATTTCACCCAT
GCTAATCGTGAATCGGCATACAAGGCTACCCTATCTATGTTTGAGAGGGAGCAGGAGCTCGACTTTATCTATGCTTGCTC
TACCGATATCGCCTTTGGTGTTGTAGATGCGTTGCAAGAATTGGGCAAGGAGCAAGTAGTAGTCAATGGCTGGGGCGGCG
GAGATTCAGAGCTTGAAGCTCTTAAAGCAGGCGAACTGGATTTTACTGTGATGCGAATGGCCGACGATACCGGCATTGCC
ATGGCTGAGGCGATTAAACTGGATATGGAAGATCGTGAGGTGCCTAGGGTTTATTCCGGTGATTTTAAGCTATTAACTAA
GCAAGACTCAGTAGAGCGAATTAATCAATTGCAACAGAGAGCGTTTCGTTATTCAGATCGATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(81-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

53.079

92.916

0.493

Multiple sequence alignment