Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   RX577_RS27050 Genome accession   NZ_CP136399
Coordinates   5705832..5706389 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UO299     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5700832..5711389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX577_RS27030 (RX577_27030) pilR 5702108..5703445 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  RX577_RS27035 (RX577_27035) thiO 5703491..5704585 (-) 1095 WP_023518092.1 glycine oxidase ThiO -
  RX577_RS27040 (RX577_27040) - 5704720..5705229 (+) 510 WP_124148889.1 Tfp pilus assembly protein FimT/FimU -
  RX577_RS27045 (RX577_27045) - 5705335..5705841 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  RX577_RS27050 (RX577_27050) pilV 5705832..5706389 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  RX577_RS27055 (RX577_27055) pilW 5706386..5707210 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  RX577_RS27060 (RX577_27060) pilX 5707207..5707794 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  RX577_RS27065 (RX577_27065) pilY1 5707806..5711297 (+) 3492 WP_025324682.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=890619 RX577_RS27050 WP_003119423.1 5705832..5706389(+) (pilV) [Pseudomonas aeruginosa strain UO299]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=890619 RX577_RS27050 WP_003119423.1 5705832..5706389(+) (pilV) [Pseudomonas aeruginosa strain UO299]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995