Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   Pcarn_RS11310 Genome accession   NZ_AP024881
Coordinates   2481822..2482337 (-) Length   171 a.a.
NCBI ID   WP_261833978.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2476822..2487337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS11285 rimM 2476973..2477503 (-) 531 WP_261833973.1 ribosome maturation factor RimM -
  Pcarn_RS11290 rpsP 2477534..2477782 (-) 249 WP_261833974.1 30S ribosomal protein S16 -
  Pcarn_RS11295 ffh 2478031..2479422 (-) 1392 WP_261833975.1 signal recognition particle protein -
  Pcarn_RS11300 - 2479618..2480412 (+) 795 WP_261833976.1 inner membrane protein YpjD -
  Pcarn_RS11305 - 2480504..2481766 (+) 1263 WP_261833977.1 HlyC/CorC family transporter -
  Pcarn_RS11310 luxS 2481822..2482337 (-) 516 WP_261833978.1 S-ribosylhomocysteine lyase Regulator
  Pcarn_RS11315 gshA 2482351..2483916 (-) 1566 WP_261833979.1 glutamate--cysteine ligase -
  Pcarn_RS11320 - 2484041..2486911 (-) 2871 WP_390904436.1 insulinase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18784.55 Da        Isoelectric Point: 4.7114

>NTDB_id=89048 Pcarn_RS11310 WP_261833978.1 2481822..2482337(-) (luxS) [Vibrio ishigakensis strain C1]
MPLLDSFTVDHTKMHAPAVRVAKTMQTPGGDTITVFDLRFTQPNKELLSEKGIHTLEHLYAGFMRDHLNGDSVEIIDISP
MGCRTGFYMSLIGTPTESQVAEAWLAAMQDVLKVEGQNKIPELNEYQCGTAAMHSLEDAKAIAQAIIDAGISVNKNDELA
LPEEMLKTLKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89048 Pcarn_RS11310 WP_261833978.1 2481822..2482337(-) (luxS) [Vibrio ishigakensis strain C1]
ATGCCTTTACTAGATAGCTTTACTGTCGACCACACTAAGATGCACGCACCAGCCGTGCGCGTAGCGAAGACAATGCAGAC
TCCGGGTGGCGATACCATCACTGTATTCGACCTTCGTTTTACTCAGCCAAACAAAGAGCTACTTTCAGAGAAGGGTATTC
ATACCCTTGAGCACCTTTACGCTGGCTTTATGCGTGATCACCTAAACGGTGACAGCGTTGAGATCATCGATATCTCTCCA
ATGGGTTGTCGTACCGGTTTCTACATGAGCCTTATCGGTACTCCAACTGAGAGCCAAGTAGCTGAAGCCTGGCTAGCAGC
TATGCAAGACGTGCTTAAGGTAGAGGGTCAGAACAAGATCCCTGAACTGAATGAGTATCAGTGTGGCACTGCAGCTATGC
ACTCTCTAGAAGATGCAAAAGCGATTGCTCAAGCTATTATCGATGCAGGTATTTCGGTAAACAAGAACGACGAGTTGGCG
CTTCCAGAAGAGATGTTAAAAACACTTAAGGTGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

100

0.854

Multiple sequence alignment