Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RVY75_RS25630 Genome accession   NZ_CP136381
Coordinates   5007885..5009234 (-) Length   449 a.a.
NCBI ID   WP_033716222.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29501     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5002885..5014234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY75_RS25605 (RVY75_25605) - 5004431..5005362 (-) 932 Protein_4978 helix-turn-helix transcriptional regulator -
  RVY75_RS25610 (RVY75_25610) - 5005445..5005888 (+) 444 WP_002016134.1 VOC family protein -
  RVY75_RS25615 (RVY75_25615) hpf 5005993..5006535 (-) 543 WP_002016135.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RVY75_RS25620 (RVY75_25620) cspC 5006857..5007054 (-) 198 WP_001990088.1 cold shock protein CspC -
  RVY75_RS25625 (RVY75_25625) - 5007181..5007885 (-) 705 WP_033716000.1 ComF family protein -
  RVY75_RS25630 (RVY75_25630) comFA 5007885..5009234 (-) 1350 WP_033716222.1 ATP-dependent helicase ComFA Machinery gene
  RVY75_RS25635 (RVY75_25635) - 5009365..5010669 (-) 1305 WP_002016141.1 NlpC/P60 family protein -
  RVY75_RS25640 (RVY75_25640) - 5010934..5011248 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  RVY75_RS25645 (RVY75_25645) - 5011411..5012253 (-) 843 WP_002016143.1 DegV family protein -
  RVY75_RS25650 (RVY75_25650) - 5012492..5013127 (+) 636 WP_002034752.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50884.26 Da        Isoelectric Point: 9.4468

>NTDB_id=890472 RVY75_RS25630 WP_033716222.1 5007885..5009234(-) (comFA) [Bacillus mycoides strain PAMC 29501]
MLAGRQLLLEELSSDLQDKLDHLKRNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFASLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGILSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=890472 RVY75_RS25630 WP_033716222.1 5007885..5009234(-) (comFA) [Bacillus mycoides strain PAMC 29501]
ATGTTAGCTGGTAGACAGTTATTGTTAGAAGAACTCTCTTCAGATTTGCAGGATAAATTGGATCATTTGAAAAGGAATCG
AGACGTGGTTTGTGTACAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTACGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCATTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGCTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGTGGAGTAACTGTTAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.567

98.218

0.497
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365