Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RVY75_RS19720 Genome accession   NZ_CP136381
Coordinates   3921158..3921592 (-) Length   144 a.a.
NCBI ID   WP_002014817.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29501     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3916158..3926592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY75_RS19705 (RVY75_19705) - 3917303..3917860 (+) 558 WP_002165135.1 PadR family transcriptional regulator -
  RVY75_RS19710 (RVY75_19710) metE 3918401..3920689 (+) 2289 WP_002014819.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  RVY75_RS19715 (RVY75_19715) comJ 3920729..3921118 (-) 390 WP_002014818.1 competence protein ComJ -
  RVY75_RS19720 (RVY75_19720) nucA/comI 3921158..3921592 (-) 435 WP_002014817.1 DNA-entry nuclease Machinery gene
  RVY75_RS19725 (RVY75_19725) - 3921829..3922572 (+) 744 WP_002014816.1 DUF3967 domain-containing protein -
  RVY75_RS19730 (RVY75_19730) - 3922632..3923906 (-) 1275 WP_002014814.1 HAMP domain-containing sensor histidine kinase -
  RVY75_RS19735 (RVY75_19735) - 3924216..3924416 (+) 201 WP_002014813.1 hypothetical protein -
  RVY75_RS19740 (RVY75_19740) - 3924651..3925814 (+) 1164 WP_002066944.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16194.59 Da        Isoelectric Point: 8.4331

>NTDB_id=890457 RVY75_RS19720 WP_002014817.1 3921158..3921592(-) (nucA/comI) [Bacillus mycoides strain PAMC 29501]
MKQFKGIIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=890457 RVY75_RS19720 WP_002014817.1 3921158..3921592(-) (nucA/comI) [Bacillus mycoides strain PAMC 29501]
ATGAAGCAATTTAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCAGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAGCGATATCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGACATTCGGAAATGTGTACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCTCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542