Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RVY75_RS10095 Genome accession   NZ_CP136381
Coordinates   1976709..1976996 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain PAMC 29501     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971709..1981996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY75_RS10075 (RVY75_10075) - 1972886..1973086 (+) 201 WP_201038404.1 DUF4083 domain-containing protein -
  RVY75_RS10080 (RVY75_10080) - 1973114..1973575 (+) 462 WP_201038403.1 NUDIX hydrolase -
  RVY75_RS10085 (RVY75_10085) nadE 1973620..1974438 (-) 819 WP_002012398.1 ammonia-dependent NAD(+) synthetase -
  RVY75_RS10090 (RVY75_10090) - 1974709..1976589 (+) 1881 WP_316280852.1 ABC transporter permease -
  RVY75_RS10095 (RVY75_10095) abrB 1976709..1976996 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RVY75_RS10100 (RVY75_10100) - 1977331..1978281 (+) 951 WP_002012402.1 serine protease -
  RVY75_RS10105 (RVY75_10105) - 1978322..1978630 (-) 309 WP_002012403.1 helix-turn-helix transcriptional regulator -
  RVY75_RS10110 (RVY75_10110) - 1978738..1979673 (+) 936 WP_002012404.1 aldo/keto reductase -
  RVY75_RS10115 (RVY75_10115) - 1979723..1979927 (+) 205 Protein_1903 hypothetical protein -
  RVY75_RS10120 (RVY75_10120) - 1979958..1980182 (-) 225 WP_002141385.1 hypothetical protein -
  RVY75_RS10125 (RVY75_10125) - 1980267..1980614 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -
  RVY75_RS10130 (RVY75_10130) - 1980811..1981338 (+) 528 Protein_1906 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=890449 RVY75_RS10095 WP_002012401.1 1976709..1976996(+) (abrB) [Bacillus mycoides strain PAMC 29501]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=890449 RVY75_RS10095 WP_002012401.1 1976709..1976996(+) (abrB) [Bacillus mycoides strain PAMC 29501]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558