Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RVY75_RS06670 Genome accession   NZ_CP136381
Coordinates   1307090..1307413 (-) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain PAMC 29501     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302090..1312413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY75_RS06645 (RVY75_06645) - 1302307..1303593 (+) 1287 WP_002166122.1 D-alanyl-D-alanine carboxypeptidase family protein -
  RVY75_RS06650 (RVY75_06650) sipW 1303790..1304359 (+) 570 WP_002064334.1 signal peptidase I SipW -
  RVY75_RS06655 (RVY75_06655) - 1304426..1305013 (+) 588 WP_000172837.1 CalY family protein -
  RVY75_RS06660 (RVY75_06660) - 1305174..1305971 (+) 798 WP_002166121.1 DUF4047 domain-containing protein -
  RVY75_RS06665 (RVY75_06665) calY 1306415..1307008 (+) 594 WP_002011472.1 biofilm matrix protein CalY -
  RVY75_RS06670 (RVY75_06670) sinR 1307090..1307413 (-) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  RVY75_RS06675 (RVY75_06675) - 1307493..1307627 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  RVY75_RS06680 (RVY75_06680) inhA1 1307969..1310356 (+) 2388 WP_002011475.1 M6 family metalloprotease immune inhibitor InhA1 -
  RVY75_RS06685 (RVY75_06685) - 1310528..1311895 (+) 1368 WP_002166120.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=890446 RVY75_RS06670 WP_002011473.1 1307090..1307413(-) (sinR) [Bacillus mycoides strain PAMC 29501]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=890446 RVY75_RS06670 WP_002011473.1 1307090..1307413(-) (sinR) [Bacillus mycoides strain PAMC 29501]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAGGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTCGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACGTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682