Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   Pcarn_RS05955 Genome accession   NZ_AP024881
Coordinates   1312863..1314278 (-) Length   471 a.a.
NCBI ID   WP_261835465.1    Uniprot ID   A0A0B8NW44
Organism   Vibrio ishigakensis strain C1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1307863..1319278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS05930 ihfA 1309135..1309437 (+) 303 WP_261835460.1 integration host factor subunit alpha -
  Pcarn_RS05935 purT 1309509..1310684 (-) 1176 WP_261835461.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  Pcarn_RS05940 cdd 1310840..1311733 (-) 894 WP_261835462.1 cytidine deaminase -
  Pcarn_RS05945 - 1311823..1312500 (-) 678 WP_261835463.1 CidB/LrgB family autolysis modulator -
  Pcarn_RS05950 - 1312497..1312859 (-) 363 WP_261835464.1 CidA/LrgA family protein -
  Pcarn_RS05955 sbcB 1312863..1314278 (-) 1416 WP_261835465.1 exodeoxyribonuclease I Machinery gene
  Pcarn_RS05960 - 1314380..1316146 (-) 1767 WP_261835466.1 bifunctional molybdopterin-guanine dinucleotide biosynthesis adaptor protein MobB/molybdopterin molybdotransferase MoeA -
  Pcarn_RS05965 mobA 1316143..1316727 (-) 585 WP_261835467.1 molybdenum cofactor guanylyltransferase MobA -
  Pcarn_RS05970 - 1316705..1317421 (-) 717 WP_261835468.1 energy-coupling factor ABC transporter ATP-binding protein -
  Pcarn_RS05975 - 1317424..1318122 (-) 699 WP_261835469.1 ABC transporter permease -
  Pcarn_RS05980 - 1318125..1318937 (-) 813 WP_261835470.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53948.28 Da        Isoelectric Point: 5.0785

>NTDB_id=89042 Pcarn_RS05955 WP_261835465.1 1312863..1314278(-) (sbcB) [Vibrio ishigakensis strain C1]
MQAPQPTFFFFDYETWGVSPAKDRPCQFAGVRTDADLNVIGEPLVIYCQPPADYLPSPEAALVTGITPQKALNEGLSEPE
FIATIHAELSKPNTTSLGYNSVRFDDEVTRYTCYRNFLDPYEWSYKNGNSRWDLLDVMRACHALRPEGINWPENDQGFTS
FKLEHLSVANGIEHSNAHDAMADVYATIELAKKVKQAQPRLFDFFYQHRGKNKLNTLVNIPEMTPLVHVSGMLSNEHLKT
GLVAPIGWTPQKALICVDLTQDITPLFELSAEEIKTRLYTPRAELEDGEVPIPVKLVHLNKCPILAPLGVLTPDALERTQ
IDKSLCLQRQAQLKQDPEVREKLDFVFSEGREFAKNPDVDQQLYDGFFSPADKAQMRIIRDANPEALGSLDIQLGDERIK
PLLFRYRARHYFHTLTDQEQRQWLGYCRDKFEQELPDYMLNLERLGEEHQADEKKMRVLKAVFQYVQQLVS

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=89042 Pcarn_RS05955 WP_261835465.1 1312863..1314278(-) (sbcB) [Vibrio ishigakensis strain C1]
ATGCAGGCTCCCCAACCGACTTTTTTCTTTTTTGATTACGAAACTTGGGGAGTAAGCCCAGCCAAGGACAGACCTTGTCA
GTTTGCAGGTGTGCGCACCGACGCTGATCTAAATGTCATTGGCGAGCCCTTGGTGATCTATTGCCAACCACCCGCTGACT
ATCTGCCAAGTCCAGAAGCGGCACTAGTCACAGGTATCACGCCACAAAAAGCACTCAATGAAGGCCTGTCTGAGCCTGAA
TTTATTGCGACTATCCACGCCGAGTTAAGTAAACCCAATACCACCAGCCTTGGCTATAACAGCGTACGCTTTGACGATGA
AGTAACTCGTTATACCTGCTATCGTAACTTCCTAGACCCGTATGAGTGGAGCTATAAGAACGGTAACTCCCGCTGGGACC
TACTCGACGTGATGCGCGCTTGTCATGCACTGCGTCCAGAGGGCATCAACTGGCCAGAGAACGACCAGGGCTTTACAAGC
TTTAAGCTGGAGCACCTTTCTGTGGCAAACGGCATCGAACACAGTAATGCGCACGATGCGATGGCCGACGTTTACGCGAC
TATCGAATTGGCTAAAAAGGTCAAGCAAGCCCAACCGAGGCTGTTCGATTTCTTCTATCAGCACCGTGGTAAGAATAAAC
TCAACACCCTAGTTAATATTCCAGAGATGACACCGCTTGTGCATGTCTCTGGCATGCTCAGCAATGAACATCTTAAAACC
GGTCTGGTTGCCCCAATCGGCTGGACACCACAAAAAGCGCTTATCTGTGTCGACCTTACGCAAGACATTACCCCGCTTTT
TGAACTCTCAGCTGAAGAGATTAAAACAAGGTTGTATACACCTAGAGCAGAGCTAGAAGATGGCGAGGTGCCTATTCCGG
TGAAACTAGTTCATTTAAACAAGTGCCCTATCCTTGCGCCACTTGGGGTATTAACCCCAGATGCACTAGAGCGCACACAG
ATAGACAAGTCCCTATGTCTGCAAAGACAAGCTCAGCTTAAACAAGACCCAGAAGTGCGTGAAAAACTGGATTTTGTGTT
CAGTGAAGGACGAGAATTTGCCAAGAATCCAGATGTGGATCAACAGCTGTACGATGGGTTTTTCAGCCCTGCCGACAAAG
CTCAGATGCGCATTATCCGAGATGCTAACCCTGAAGCTCTAGGCTCGCTCGATATCCAACTGGGTGACGAGCGAATTAAA
CCGCTACTGTTTCGCTATCGTGCACGCCACTACTTCCATACCCTAACGGACCAAGAACAAAGACAGTGGCTTGGATACTG
TCGTGATAAATTCGAGCAAGAGCTACCCGACTACATGCTCAATCTGGAGCGACTCGGTGAAGAACATCAAGCCGATGAGA
AGAAGATGCGGGTGCTAAAAGCCGTGTTCCAATACGTTCAACAACTTGTTTCGTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8NW44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

68.365

100

0.684

Multiple sequence alignment