Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RVY74_RS21465 Genome accession   NZ_CP136372
Coordinates   4158820..4161156 (-) Length   778 a.a.
NCBI ID   WP_201064345.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29434     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4153820..4166156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY74_RS21440 (RVY74_21440) - 4156480..4156824 (+) 345 WP_002034108.1 PH domain-containing protein -
  RVY74_RS21445 (RVY74_21445) - 4156863..4157930 (-) 1068 WP_002129216.1 AI-2E family transporter -
  RVY74_RS21450 (RVY74_21450) - 4158108..4158320 (+) 213 WP_002015285.1 hypothetical protein -
  RVY74_RS21455 (RVY74_21455) - 4158357..4158485 (-) 129 WP_002015286.1 YrzQ family protein -
  RVY74_RS21460 (RVY74_21460) - 4158504..4158692 (-) 189 WP_002015288.1 hypothetical protein -
  RVY74_RS21465 (RVY74_21465) recD2 4158820..4161156 (-) 2337 WP_201064345.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RVY74_RS21470 (RVY74_21470) - 4161264..4161923 (-) 660 WP_002143220.1 tetratricopeptide repeat protein -
  RVY74_RS21475 (RVY74_21475) mnmA 4162034..4163149 (-) 1116 WP_002088752.1 tRNA 2-thiouridine(34) synthase MnmA -
  RVY74_RS21480 (RVY74_21480) - 4163166..4164311 (-) 1146 WP_002143221.1 cysteine desulfurase family protein -
  RVY74_RS21485 (RVY74_21485) cymR 4164347..4164763 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87228.83 Da        Isoelectric Point: 5.2670

>NTDB_id=890414 RVY74_RS21465 WP_201064345.1 4158820..4161156(-) (recD2) [Bacillus mycoides strain PAMC 29434]
MGNQHAMDLFEEEKRFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=890414 RVY74_RS21465 WP_201064345.1 4158820..4161156(-) (recD2) [Bacillus mycoides strain PAMC 29434]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAGATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAACTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCTGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGTAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGCGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACGTTAGGAGAAATTGAAGAACAGCTAAAGGTACAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTGTTAACAGGTGGACCAGGGACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGAGTATCATTAAATCCGAATGAATATAGTGATGATAATCCATTTCCAATA
TTATTAACGGCCCCAACTGGAAGAGCGGCGAAGCGCATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCATCGTCT
GCTTGGATGGACGCCAGAAGGATCTTTTCAGCGCAATGAAACAGACCCTGTACAAGGGAAGCTCCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTGAATGCAGGTGCGGTTCCAACGGTCAAGCT
TACAGAAATTTATCGTCAAGCGGAAGGGTCATCTGTTATTCAACTTGCCCATGCGATAAAGGACGGAACACTTCCACCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGTGCTCAAATTGTTGAAGTTGTAAAAAAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAGCGCAAGAGATGTACAAGTGTTGGCACCTATGTACCGCGGACCGGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTCAATCCGAAAAAAGAAAAAAGTAAAGAAATTGCCTACGGTGACGTTGTAT
ACCGCAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTATTTAATGGTGATATCGGAGAAATCGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACGTATAC
AAAGCCAGATTTAAATCAAATTACACATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTAAAAAGCTATAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCGTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTGACAGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578