Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RVY74_RS20085 Genome accession   NZ_CP136372
Coordinates   3931559..3932353 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain PAMC 29434     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3926559..3937353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY74_RS20050 (RVY74_20050) - 3926701..3927264 (-) 564 WP_002033955.1 PRK06770 family protein -
  RVY74_RS20055 (RVY74_20055) - 3927562..3927660 (-) 99 Protein_3892 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  RVY74_RS20060 (RVY74_20060) - 3927899..3928174 (-) 276 WP_002033954.1 hypothetical protein -
  RVY74_RS20065 (RVY74_20065) - 3928261..3928719 (-) 459 WP_012261693.1 SMI1/KNR4 family protein -
  RVY74_RS20070 (RVY74_20070) - 3928741..3929964 (-) 1224 WP_201064377.1 WXG100 family type VII secretion target -
  RVY74_RS20075 (RVY74_20075) - 3930129..3930806 (-) 678 WP_201064375.1 sigma-70 family RNA polymerase sigma factor -
  RVY74_RS20080 (RVY74_20080) - 3931100..3931372 (-) 273 WP_242489438.1 site-specific integrase -
  RVY74_RS20085 (RVY74_20085) spo0A 3931559..3932353 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  RVY74_RS20090 (RVY74_20090) spoIVB 3932640..3933932 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  RVY74_RS20095 (RVY74_20095) recN 3934052..3935791 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  RVY74_RS20100 (RVY74_20100) argR 3936062..3936511 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=890408 RVY74_RS20085 WP_002015081.1 3931559..3932353(-) (spo0A) [Bacillus mycoides strain PAMC 29434]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=890408 RVY74_RS20085 WP_002015081.1 3931559..3932353(-) (spo0A) [Bacillus mycoides strain PAMC 29434]
GTGGAGAAAATTAAAGTGTGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACGGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818