Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RVY74_RS19180 Genome accession   NZ_CP136372
Coordinates   3772531..3772965 (-) Length   144 a.a.
NCBI ID   WP_002014817.1    Uniprot ID   -
Organism   Bacillus mycoides strain PAMC 29434     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3767531..3777965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY74_RS19165 (RVY74_19165) - 3768673..3769230 (+) 558 WP_002128898.1 PadR family transcriptional regulator -
  RVY74_RS19170 (RVY74_19170) metE 3769772..3772060 (+) 2289 WP_201064481.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  RVY74_RS19175 (RVY74_19175) comJ 3772102..3772491 (-) 390 WP_002088359.1 competence protein ComJ -
  RVY74_RS19180 (RVY74_19180) nucA/comI 3772531..3772965 (-) 435 WP_002014817.1 DNA-entry nuclease Machinery gene
  RVY74_RS19185 (RVY74_19185) - 3773202..3773945 (+) 744 WP_002033817.1 DUF3967 domain-containing protein -
  RVY74_RS19190 (RVY74_19190) - 3774005..3775279 (-) 1275 WP_002014814.1 HAMP domain-containing sensor histidine kinase -
  RVY74_RS19195 (RVY74_19195) - 3775589..3775789 (+) 201 WP_000929276.1 hypothetical protein -
  RVY74_RS19200 (RVY74_19200) - 3776025..3777188 (+) 1164 WP_201064479.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16194.59 Da        Isoelectric Point: 8.4331

>NTDB_id=890407 RVY74_RS19180 WP_002014817.1 3772531..3772965(-) (nucA/comI) [Bacillus mycoides strain PAMC 29434]
MKQFKGIIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=890407 RVY74_RS19180 WP_002014817.1 3772531..3772965(-) (nucA/comI) [Bacillus mycoides strain PAMC 29434]
ATGAAGCAATTTAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCAGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAACGATATCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGACATTCGGAAATGTGTACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCTCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542