Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Pcarn_RS04135 Genome accession   NZ_AP024881
Coordinates   865937..867331 (+) Length   464 a.a.
NCBI ID   WP_261835124.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 860937..872331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS04115 - 861705..861875 (+) 171 WP_261835121.1 hypothetical protein -
  Pcarn_RS04120 - 862010..863104 (+) 1095 WP_261835122.1 alkene reductase -
  Pcarn_RS04130 uvrB 863880..865925 (+) 2046 WP_261835123.1 excinuclease ABC subunit UvrB -
  Pcarn_RS04135 luxO 865937..867331 (+) 1395 WP_261835124.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Pcarn_RS04140 - 867387..867653 (+) 267 WP_261835125.1 Hpt domain-containing protein -
  Pcarn_RS04145 yvcK 867645..868532 (-) 888 WP_261835126.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  Pcarn_RS04150 moaA 868830..869819 (+) 990 WP_261835127.1 GTP 3',8-cyclase MoaA -
  Pcarn_RS04155 moaB 869897..870409 (+) 513 WP_261835128.1 molybdenum cofactor biosynthesis protein B -
  Pcarn_RS04160 moaC 870415..870894 (+) 480 WP_261835129.1 cyclic pyranopterin monophosphate synthase MoaC -
  Pcarn_RS04165 moaD 870891..871136 (+) 246 WP_261835130.1 molybdopterin synthase sulfur carrier subunit -
  Pcarn_RS04170 moaE 871138..871596 (+) 459 WP_261835131.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51690.16 Da        Isoelectric Point: 5.0861

>NTDB_id=89040 Pcarn_RS04135 WP_261835124.1 865937..867331(+) (luxO) [Vibrio ishigakensis strain C1]
MSESLRKRLLMVEDTLSVATLYQAYLASLDIDIEIVSTGQQAITSIRSQVPNLILLDLKLPDMTGMDVLKKVRTLAPEVP
VIFMTAHGSIDVAVEAMREGAYDFLIKPCEADRLRVTISKAIHQTHSSNKQQLFGESNTYQGFIGSSPSMHKVYRTIDSA
ASSKASIFITGESGTGKEVCAEAIHSVSNRSEEPFIALNCAAIPKDLIESELFGHVKGAFTGASTDRKGAAELADGGTLF
LDELCEMELDLQTKLLRFIQTGTFQKVGSSKLSRVDVRFVCATNKDPWQEVQKGRFREDLYYRLYVIPLHLPPLRERGDD
IIEIGYSLLGFMSIEENKAFNKFSPEVLRRFLAYPWPGNVRQLQNVIRNIVVLNQGEEVSLEMLPSPLDSVEVAEHSEST
VTNFLTPLTEEDEDEIVPLSLIERRVIERAIKLCDGSIPAAANKLDVSASTIYRKIERWEKGRG

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=89040 Pcarn_RS04135 WP_261835124.1 865937..867331(+) (luxO) [Vibrio ishigakensis strain C1]
ATGTCAGAATCCCTAAGAAAGCGATTATTGATGGTAGAAGACACCTTATCGGTGGCGACCCTGTATCAGGCTTATTTAGC
ATCGCTGGATATCGATATTGAGATAGTCTCTACCGGTCAGCAGGCAATTACCAGTATTCGCAGTCAGGTACCCAACCTGA
TCTTACTGGATCTTAAATTGCCTGATATGACGGGTATGGATGTGCTTAAAAAGGTCCGAACACTGGCGCCCGAGGTGCCG
GTGATCTTTATGACTGCACATGGCTCTATTGATGTAGCTGTCGAGGCAATGCGTGAAGGGGCGTATGACTTTCTGATCAA
GCCGTGTGAGGCAGACCGACTGCGCGTCACTATTTCTAAGGCGATCCACCAAACTCATAGCAGTAATAAACAGCAGCTAT
TTGGTGAGAGTAACACCTATCAAGGTTTTATCGGTTCTAGCCCGAGTATGCACAAGGTGTACCGCACCATAGATTCTGCT
GCCAGCAGTAAGGCGAGCATCTTTATCACCGGCGAAAGTGGCACAGGTAAAGAGGTGTGCGCCGAGGCTATTCACTCGGT
GAGTAACCGAAGTGAAGAGCCGTTTATCGCCCTAAACTGTGCTGCTATTCCAAAGGATCTGATCGAGAGTGAGCTGTTTG
GTCACGTGAAAGGCGCGTTTACCGGTGCCTCTACCGACCGTAAAGGTGCGGCAGAATTGGCTGACGGCGGTACTTTGTTT
TTGGATGAGCTTTGCGAGATGGAGCTGGATCTTCAGACCAAGCTACTGCGCTTTATTCAGACCGGTACCTTCCAGAAGGT
AGGCTCCTCTAAACTGAGCCGGGTAGACGTTCGTTTTGTGTGCGCAACCAACAAAGACCCTTGGCAAGAGGTGCAGAAAG
GCCGCTTTCGTGAAGACCTGTATTATCGCTTGTACGTGATTCCTCTGCATCTGCCACCGCTTCGTGAACGGGGCGATGAC
ATCATAGAAATCGGTTACTCACTGCTGGGCTTTATGTCCATCGAAGAGAATAAAGCCTTCAATAAATTCTCTCCTGAGGT
GTTAAGGCGCTTCTTAGCTTATCCATGGCCTGGTAACGTGCGCCAATTGCAGAACGTAATCCGCAATATCGTTGTATTAA
ACCAAGGTGAAGAGGTGAGCCTAGAAATGTTGCCATCACCGCTTGATTCGGTAGAGGTCGCAGAGCACTCAGAATCGACA
GTGACCAACTTTCTAACACCGTTAACCGAAGAAGATGAGGATGAGATTGTTCCTCTATCCTTGATTGAACGTCGCGTTAT
CGAGCGCGCCATAAAATTATGTGATGGCTCTATTCCAGCGGCTGCAAACAAGCTGGATGTGAGCGCATCGACCATCTATC
GTAAGATTGAGCGTTGGGAGAAAGGGCGTGGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-118)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

70.354

97.414

0.685

Multiple sequence alignment