Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RVY74_RS10610 Genome accession   NZ_CP136372
Coordinates   2073342..2073680 (+) Length   112 a.a.
NCBI ID   WP_002141572.1    Uniprot ID   A0A366GBI4
Organism   Bacillus mycoides strain PAMC 29434     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2068342..2078680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY74_RS10585 (RVY74_10585) - 2068698..2069375 (-) 678 WP_201067080.1 hypothetical protein -
  RVY74_RS10590 (RVY74_10590) - 2069485..2070132 (+) 648 WP_002012557.1 HD domain-containing protein -
  RVY74_RS10595 (RVY74_10595) - 2070129..2072024 (+) 1896 WP_002127139.1 ABC-F family ATP-binding cassette domain-containing protein -
  RVY74_RS10600 (RVY74_10600) - 2072100..2072831 (+) 732 WP_002127140.1 Bax inhibitor-1/YccA family protein -
  RVY74_RS10605 (RVY74_10605) - 2072926..2073180 (+) 255 WP_002012563.1 DUF4318 domain-containing protein -
  RVY74_RS10610 (RVY74_10610) ssbA 2073342..2073680 (+) 339 WP_002141572.1 single-stranded DNA-binding protein Machinery gene
  RVY74_RS10615 (RVY74_10615) - 2073730..2074320 (-) 591 WP_002136037.1 TetR/AcrR family transcriptional regulator -
  RVY74_RS10620 (RVY74_10620) - 2074465..2075598 (-) 1134 WP_201067086.1 FAD-dependent monooxygenase -
  RVY74_RS10625 (RVY74_10625) - 2075856..2076983 (+) 1128 WP_201067089.1 conserved virulence factor C family protein -
  RVY74_RS10630 (RVY74_10630) - 2076987..2077370 (+) 384 WP_316281978.1 DUF393 domain-containing protein -
  RVY74_RS10635 (RVY74_10635) - 2077453..2077887 (+) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12909.70 Da        Isoelectric Point: 9.1002

>NTDB_id=890399 RVY74_RS10610 WP_002141572.1 2073342..2073680(+) (ssbA) [Bacillus mycoides strain PAMC 29434]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=890399 RVY74_RS10610 WP_002141572.1 2073342..2073680(+) (ssbA) [Bacillus mycoides strain PAMC 29434]
ATGATGAATCGGGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTTGTAT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAGCATTACATTTCTGGAGAGAAGGAG
GGAGGGGGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GBI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

50.42

100

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

98.214

0.429
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

93.75

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbA Streptococcus mutans UA159

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402