Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RVY74_RS09865 Genome accession   NZ_CP136372
Coordinates   1942400..1942687 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain PAMC 29434     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1937400..1947687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY74_RS09845 (RVY74_09845) - 1938583..1938783 (+) 201 WP_316281972.1 DUF4083 domain-containing protein -
  RVY74_RS09850 (RVY74_09850) - 1938811..1939272 (+) 462 WP_016094227.1 NUDIX hydrolase -
  RVY74_RS09855 (RVY74_09855) nadE 1939317..1940135 (-) 819 WP_002064947.1 ammonia-dependent NAD(+) synthetase -
  RVY74_RS09860 (RVY74_09860) - 1940400..1942280 (+) 1881 WP_316281973.1 ABC transporter permease -
  RVY74_RS09865 (RVY74_09865) abrB 1942400..1942687 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RVY74_RS09870 (RVY74_09870) - 1943022..1943972 (+) 951 WP_201066948.1 serine protease -
  RVY74_RS09875 (RVY74_09875) - 1944013..1944321 (-) 309 WP_016102179.1 helix-turn-helix transcriptional regulator -
  RVY74_RS09880 (RVY74_09880) - 1944429..1945364 (+) 936 WP_201066955.1 aldo/keto reductase -
  RVY74_RS09885 (RVY74_09885) - 1945414..1946589 (+) 1176 WP_316281974.1 MFS transporter -
  RVY74_RS09890 (RVY74_09890) - 1946774..1946998 (-) 225 WP_002012407.1 hypothetical protein -
  RVY74_RS09895 (RVY74_09895) - 1947083..1947430 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=890398 RVY74_RS09865 WP_002012401.1 1942400..1942687(+) (abrB) [Bacillus mycoides strain PAMC 29434]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=890398 RVY74_RS09865 WP_002012401.1 1942400..1942687(+) (abrB) [Bacillus mycoides strain PAMC 29434]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558