Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK31_RS17245 Genome accession   NZ_AP027679
Coordinates   3508069..3508584 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain PSS-08-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3503069..3513584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK31_RS17220 (VEE22_33280) ygaZ 3503468..3504205 (+) 738 WP_338388658.1 L-valine exporter subunit YgaZ -
  AABK31_RS17225 (VEE22_33290) ygaH 3504195..3504530 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  AABK31_RS17230 (VEE22_33300) emrR 3504621..3505151 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK31_RS17235 (VEE22_33310) emrA 3505278..3506450 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK31_RS17240 (VEE22_33320) emrB 3506467..3508005 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK31_RS17245 (VEE22_33330) luxS 3508069..3508584 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK31_RS17250 (VEE22_33340) gshA 3508734..3510290 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABK31_RS17255 (VEE22_33350) yqaA 3510363..3510791 (-) 429 WP_001287454.1 YqaA family protein -
  AABK31_RS17260 (VEE22_33360) yqaB 3510788..3511354 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK31_RS17290 (VEE22_33370) csrA 3512812..3512997 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=89038 AABK31_RS17245 WP_001130211.1 3508069..3508584(-) (luxS) [Escherichia coli strain PSS-08-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89038 AABK31_RS17245 WP_001130211.1 3508069..3508584(-) (luxS) [Escherichia coli strain PSS-08-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment