Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   Pcarn_RS00810 Genome accession   NZ_AP024881
Coordinates   170699..171703 (-) Length   334 a.a.
NCBI ID   WP_261834527.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 165699..176703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS00785 rfaD 165786..166727 (-) 942 WP_261834522.1 ADP-glyceromanno-heptose 6-epimerase -
  Pcarn_RS00790 - 166891..168057 (+) 1167 WP_261834523.1 nucleotide sugar dehydrogenase -
  Pcarn_RS00795 hslU 168126..169457 (-) 1332 WP_261834524.1 HslU--HslV peptidase ATPase subunit -
  Pcarn_RS00800 hslV 169472..169996 (-) 525 WP_261834525.1 ATP-dependent protease subunit HslV -
  Pcarn_RS00805 - 170088..170633 (-) 546 WP_261834526.1 SPOR domain-containing protein -
  Pcarn_RS00810 cytR 170699..171703 (-) 1005 WP_261834527.1 DNA-binding transcriptional regulator CytR Regulator
  Pcarn_RS00815 priA 171930..174131 (-) 2202 WP_261834528.1 primosomal protein N' -
  Pcarn_RS00820 rpmE 174375..174593 (+) 219 WP_004737142.1 50S ribosomal protein L31 -
  Pcarn_RS00825 - 174735..175997 (+) 1263 WP_261834529.1 malic enzyme-like NAD(P)-binding protein -
  Pcarn_RS00830 metJ 176059..176376 (-) 318 WP_261834530.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36475.62 Da        Isoelectric Point: 5.2140

>NTDB_id=89035 Pcarn_RS00810 WP_261834527.1 170699..171703(-) (cytR) [Vibrio ishigakensis strain C1]
MATMKDVAELAGVSTATVSRALMNPEKVSSATRKKVEDAVVESGYCPNTMVRSVKRNESKTLVVIVPDLCDPYFSEIIRG
IEHAASEQGYLVLHGDSHQQKCRDNSLVNLVYSKQADGLILLGTDLPIDASKAEQKNLPPMVMACEFAPELELPTVHIDN
LTASFEAVNYLAQLGHKQIAEITGPDTSALSNFRSQGYQQALRRAGLTIDLTKSVSGDFSFDSGAKAMRKLLGSPTPPTA
VFCHNDMMAIGAMREAKAMGMRIPQDISIIGFDNIEFSEYCEPALTTVAQPRFDIGYQATQMLFNILNGDDVRTGSRLLD
TELIQRQSTMPPSH

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=89035 Pcarn_RS00810 WP_261834527.1 170699..171703(-) (cytR) [Vibrio ishigakensis strain C1]
ATGGCGACGATGAAGGATGTTGCTGAGTTGGCAGGAGTGTCAACCGCTACAGTATCGCGAGCGTTAATGAACCCAGAGAA
AGTTTCTTCTGCCACACGCAAGAAGGTTGAGGATGCAGTGGTTGAATCAGGCTACTGCCCAAACACCATGGTGCGTAGCG
TGAAACGAAACGAATCCAAGACGCTAGTGGTGATCGTGCCAGATCTTTGCGATCCCTACTTCTCTGAAATCATCCGCGGG
ATCGAGCACGCTGCATCTGAACAGGGCTATCTCGTTCTGCATGGCGATAGCCATCAGCAGAAATGTCGCGATAACTCGTT
AGTAAACCTTGTCTATTCCAAGCAAGCCGATGGCCTTATTCTTTTAGGTACCGACCTACCCATCGATGCCAGCAAGGCCG
AGCAAAAGAATCTGCCACCTATGGTGATGGCATGTGAGTTTGCTCCAGAGCTAGAATTGCCTACCGTTCACATCGATAAC
CTTACCGCTTCTTTTGAAGCAGTTAATTATCTAGCCCAACTAGGACATAAACAGATAGCGGAGATCACAGGCCCTGATAC
CTCAGCCCTATCGAACTTCCGTAGCCAAGGCTATCAGCAAGCTCTGCGCCGTGCTGGGTTAACTATCGACCTAACCAAAT
CTGTATCTGGCGACTTTAGCTTTGATTCAGGGGCAAAGGCGATGCGTAAACTACTCGGCTCACCTACCCCTCCAACTGCA
GTATTCTGTCACAACGACATGATGGCTATCGGTGCAATGCGCGAGGCAAAGGCTATGGGTATGCGTATCCCGCAAGATAT
CTCTATCATCGGCTTCGATAACATAGAGTTCTCAGAATATTGTGAGCCCGCACTAACCACGGTTGCACAGCCAAGATTCG
ATATCGGCTACCAAGCAACTCAGATGCTATTCAACATATTGAATGGTGATGATGTAAGAACCGGCTCTCGTCTTCTGGAT
ACTGAACTAATTCAGCGTCAAAGTACCATGCCACCGAGCCACTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

71.084

99.401

0.707
  cytR Vibrio cholerae C6706

70.571

99.701

0.704

Multiple sequence alignment