Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU48_RS13660 Genome accession   NZ_AP024879
Coordinates   95242..96333 (+) Length   363 a.a.
NCBI ID   WP_141346406.1    Uniprot ID   -
Organism   Vibrio inusitatus strain LMG 23434     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 90242..101333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU48_RS13635 - 90509..91846 (-) 1338 WP_141346411.1 sigma-54-dependent transcriptional regulator -
  OCU48_RS13640 - 91849..93618 (-) 1770 WP_141346410.1 sensor histidine kinase -
  OCU48_RS13645 - 93782..94096 (-) 315 WP_141346409.1 DUF496 family protein -
  OCU48_RS13650 - 94305..94958 (+) 654 WP_141346408.1 YceH family protein -
  OCU48_RS13655 - 94970..95245 (+) 276 WP_141346407.1 GIY-YIG nuclease family protein -
  OCU48_RS13660 luxP 95242..96333 (+) 1092 WP_141346406.1 substrate-binding domain-containing protein Regulator
  OCU48_RS13665 - 96387..98852 (+) 2466 WP_244312350.1 LuxQ periplasmic sensor domain-containing protein -
  OCU48_RS13670 - 98852..99799 (+) 948 WP_141346404.1 hypothetical protein -
  OCU48_RS13675 - 99832..100659 (-) 828 WP_141346403.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 41843.42 Da        Isoelectric Point: 5.1879

>NTDB_id=89031 OCU48_RS13660 WP_141346406.1 95242..96333(+) (luxP) [Vibrio inusitatus strain LMG 23434]
MRWLFAGVILLSFQCLANNTILREYWEYDAFLDEYPKHKQLAQDMDFRIYQPPVPLKVEQIKPVRIDIVYPGSQLSDYWW
RNIKALEIRLQELGIEFDLRKYSSRPNLDYRQESESLQQAITNDSDYLIFTLDTSRHKKFAESVLSNHHTKLILLNITTP
IKAWGKKQPLMYVGFDHVRGTELLAREYKKAFPESANYGLIYYSPGYISEARGDTFIKFLKEGGDYSLKRAYFTKANRET
GYQAALSMIEQEAHLDFIYACSTDLAFGVTDALSDLGREDIVVNGWGGGSEIKAVQDGTLDFTVVRMNDDTGLAIAEAIK
LDLQNDPVPQVYSGEFEVFTKYDDAKRAEALKLKAFRYSDRQE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=89031 OCU48_RS13660 WP_141346406.1 95242..96333(+) (luxP) [Vibrio inusitatus strain LMG 23434]
ATGAGATGGCTTTTTGCAGGAGTAATATTGCTTTCCTTTCAATGCTTGGCGAACAACACGATATTGAGAGAGTACTGGGA
ATATGATGCGTTCTTGGATGAGTATCCTAAGCACAAGCAACTCGCTCAAGATATGGATTTTAGGATCTACCAACCCCCAG
TACCATTAAAGGTTGAGCAAATTAAGCCGGTGAGAATTGATATCGTTTACCCGGGCTCTCAACTTTCAGATTATTGGTGG
AGAAACATTAAGGCGCTGGAGATTAGATTGCAGGAATTGGGCATCGAATTTGATCTTCGAAAATATTCTTCACGCCCTAA
TCTCGATTATCGTCAAGAAAGCGAAAGTTTACAGCAAGCTATAACCAATGATTCTGATTATTTGATTTTCACTTTGGATA
CAAGCCGTCATAAAAAATTTGCCGAAAGTGTCCTTAGTAACCACCATACGAAACTGATTCTTCTCAATATCACCACCCCC
ATTAAAGCATGGGGCAAAAAACAACCGTTAATGTATGTAGGTTTTGACCATGTACGTGGTACAGAATTATTAGCAAGGGA
GTACAAGAAAGCTTTTCCGGAATCAGCCAATTATGGTTTGATTTACTATTCTCCTGGCTACATAAGTGAGGCTCGTGGAG
ATACTTTCATTAAGTTCTTGAAAGAAGGAGGAGACTATTCCCTAAAACGAGCGTACTTCACAAAAGCGAATAGAGAAACC
GGCTACCAAGCAGCACTGTCTATGATTGAGCAAGAAGCCCACCTAGACTTTATTTATGCTTGCTCAACCGACTTAGCCTT
CGGCGTGACTGATGCTTTATCTGACTTAGGTAGGGAAGATATTGTAGTAAACGGCTGGGGTGGCGGCTCAGAAATTAAGG
CTGTTCAAGACGGAACACTGGATTTTACGGTAGTGAGGATGAACGACGATACGGGTTTGGCGATTGCCGAGGCGATTAAG
CTTGACCTACAGAATGATCCTGTTCCTCAGGTGTATTCGGGAGAGTTTGAAGTCTTTACAAAGTACGATGATGCCAAGCG
GGCTGAAGCCTTGAAACTTAAAGCATTTCGGTATTCGGATAGGCAAGAATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(76-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

51.515

100

0.515

Multiple sequence alignment