Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU48_RS12325 Genome accession   NZ_AP024878
Coordinates   2673332..2674336 (+) Length   334 a.a.
NCBI ID   WP_141345642.1    Uniprot ID   A0A4Y3HW37
Organism   Vibrio inusitatus strain LMG 23434     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2668332..2679336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU48_RS12305 metJ 2668580..2668897 (+) 318 WP_141271780.1 met regulon transcriptional regulator MetJ -
  OCU48_RS12310 - 2668991..2670253 (-) 1263 WP_141345644.1 malic enzyme-like NAD(P)-binding protein -
  OCU48_RS12315 rpmE 2670421..2670639 (-) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCU48_RS12320 priA 2670939..2673140 (+) 2202 WP_141345643.1 primosomal protein N' -
  OCU48_RS12325 cytR 2673332..2674336 (+) 1005 WP_141345642.1 DNA-binding transcriptional regulator CytR Regulator
  OCU48_RS12330 - 2674403..2674954 (+) 552 WP_141345641.1 SPOR domain-containing protein -
  OCU48_RS12335 hslV 2675101..2675625 (+) 525 WP_141345640.1 ATP-dependent protease subunit HslV -
  OCU48_RS12340 hslU 2675635..2676969 (+) 1335 WP_141345639.1 HslU--HslV peptidase ATPase subunit -
  OCU48_RS12345 - 2677132..2678226 (-) 1095 WP_141345695.1 LPS O-antigen chain length determinant protein WzzB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36501.55 Da        Isoelectric Point: 4.9548

>NTDB_id=89027 OCU48_RS12325 WP_141345642.1 2673332..2674336(+) (cytR) [Vibrio inusitatus strain LMG 23434]
MATMKDVAELAGVSTATVSRALMNPEKVSSSTRKRVEEAVIESGYCPSAMMRSMKRNESRTLVVIVPNLCDPYFSEIIRG
IETAASEQGYLVLHGDSSQQKCRDNSLVNLIYSKQADGLILLGTDLPIDASKSEQRNLPPMVMACEYAPELELPTVHIDN
LTASFQAVNYLAKLGHKRIGEIRGPDNAPLSSFRSQGFQQALRRAGLSIDLTNSASGDFSFESGALALRKLMSAGSPPSA
VFCHNDMMAIGAIKEAKNMGLRVPQDISFIGFDNIEFSEYCDPPLTTVSQPRYDIGYQATQMLFELLNGNEINSGSRLLD
TELVVRESTLPPSY

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=89027 OCU48_RS12325 WP_141345642.1 2673332..2674336(+) (cytR) [Vibrio inusitatus strain LMG 23434]
ATGGCGACCATGAAGGATGTTGCTGAACTCGCTGGCGTTTCCACTGCGACAGTATCAAGAGCGTTGATGAACCCAGAAAA
AGTGTCCTCCTCAACTCGCAAACGAGTAGAAGAGGCAGTTATCGAATCGGGTTACTGCCCAAGCGCAATGATGCGCAGCA
TGAAACGTAACGAATCAAGAACCCTCGTAGTAATAGTACCTAATCTTTGCGACCCTTATTTTTCTGAAATCATTCGTGGC
ATCGAAACCGCTGCGTCAGAACAAGGCTACCTAGTACTTCACGGCGACAGCTCACAGCAAAAATGCAGGGATAACTCACT
GGTCAATCTTATCTACTCTAAGCAAGCGGATGGCTTGATTTTACTTGGTACTGATTTACCTATCGATGCAAGTAAATCAG
AACAAAGAAATCTTCCACCTATGGTGATGGCTTGTGAATACGCGCCAGAACTAGAGTTGCCTACCGTACATATCGATAAT
CTTACTGCTTCTTTTCAGGCTGTGAACTATCTCGCTAAACTTGGGCATAAGCGCATAGGAGAGATTCGTGGACCAGATAA
CGCCCCTCTATCTAGTTTCCGAAGCCAAGGTTTCCAACAAGCGTTGCGACGTGCAGGCCTCAGCATTGACTTAACCAATT
CAGCCAGCGGTGACTTTAGCTTCGAATCTGGGGCGTTGGCACTGCGTAAGCTAATGAGTGCAGGCTCCCCACCAAGTGCT
GTTTTTTGTCACAACGATATGATGGCGATTGGCGCAATCAAAGAAGCCAAAAATATGGGACTTAGAGTTCCACAGGACAT
TTCATTTATTGGATTCGACAATATAGAGTTTTCTGAATATTGCGATCCACCACTGACAACTGTCTCCCAGCCTCGCTATG
ATATCGGCTATCAAGCCACTCAAATGCTATTCGAACTCCTCAATGGCAACGAGATTAACTCAGGCTCACGACTTCTAGAT
ACAGAGCTTGTGGTAAGAGAAAGTACCTTACCTCCTAGTTATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3HW37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

70.27

99.701

0.701
  cytR Vibrio parahaemolyticus RIMD 2210633

70.181

99.401

0.698

Multiple sequence alignment