Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU48_RS02310 Genome accession   NZ_AP024878
Coordinates   478898..479413 (+) Length   171 a.a.
NCBI ID   WP_141347220.1    Uniprot ID   A0A4Y3I0P7
Organism   Vibrio inusitatus strain LMG 23434     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 473898..484413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU48_RS02300 - 474323..477211 (+) 2889 WP_141347222.1 M16 family metallopeptidase -
  OCU48_RS02305 gshA 477310..478881 (+) 1572 WP_167496240.1 glutamate--cysteine ligase -
  OCU48_RS02310 luxS 478898..479413 (+) 516 WP_141347220.1 S-ribosylhomocysteine lyase Regulator
  OCU48_RS02315 - 479484..480746 (-) 1263 WP_141347219.1 HlyC/CorC family transporter -
  OCU48_RS02320 - 480822..481616 (-) 795 WP_141347218.1 cytochrome C assembly family protein -
  OCU48_RS02325 ffh 481767..483158 (+) 1392 WP_141347217.1 signal recognition particle protein -
  OCU48_RS02330 rpsP 483401..483649 (+) 249 WP_017027436.1 30S ribosomal protein S16 -
  OCU48_RS02335 rimM 483685..484215 (+) 531 WP_141347216.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18799.38 Da        Isoelectric Point: 4.4421

>NTDB_id=89013 OCU48_RS02310 WP_141347220.1 478898..479413(+) (luxS) [Vibrio inusitatus strain LMG 23434]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPSGDTITVFDLRFTQPNKDILSERGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSESDVATAWVSSMEDVLKVEGQNKIPELNEYQCGTAEMHSLEEAKAIASAILEAGVSVNKNDELA
LPEEMLQTLKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89013 OCU48_RS02310 WP_141347220.1 478898..479413(+) (luxS) [Vibrio inusitatus strain LMG 23434]
ATGCCCCTATTAGACAGTTTTACAGTTGACCACACCAAAATGAACGCACCAGCAGTGCGCGTGGCAAAAACGATGCAAAC
TCCAAGTGGCGATACGATTACAGTATTCGACCTTCGCTTTACTCAGCCGAACAAAGACATCCTGTCCGAAAGAGGGATTC
ATACACTTGAGCATCTGTACGCCGGTTTTATGCGTAACCACCTAAATGGTGACTCAGTTGAAATTATCGATATTTCTCCA
ATGGGATGCCGTACTGGTTTTTACATGAGCCTGATTGGTACACCGTCTGAGTCTGATGTAGCCACTGCATGGGTTTCATC
AATGGAAGATGTACTTAAGGTAGAGGGACAAAATAAAATCCCTGAGCTGAATGAATACCAATGTGGTACTGCAGAAATGC
ACTCTCTAGAAGAAGCGAAAGCTATCGCTAGCGCTATTCTGGAAGCAGGAGTGTCAGTGAATAAAAATGATGAGCTTGCT
CTTCCTGAAGAGATGCTGCAAACACTTAAGGTGTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3I0P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

83.626

100

0.836

Multiple sequence alignment