Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RXV79_RS25230 Genome accession   NZ_CP136336
Coordinates   5317276..5318634 (+) Length   452 a.a.
NCBI ID   WP_316700888.1    Uniprot ID   -
Organism   Piscinibacter gummiphilus strain SBD 7-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5312276..5323634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RXV79_RS25205 (RXV79_25205) arfB 5312882..5313283 (+) 402 WP_316700882.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  RXV79_RS25210 (RXV79_25210) - 5313327..5314583 (-) 1257 WP_316700883.1 HD-GYP domain-containing protein -
  RXV79_RS25215 (RXV79_25215) - 5314679..5315308 (-) 630 WP_316700884.1 LysE family transporter -
  RXV79_RS25220 (RXV79_25220) - 5315330..5316784 (-) 1455 WP_316700885.1 PLP-dependent aminotransferase family protein -
  RXV79_RS25225 (RXV79_25225) - 5316956..5317279 (+) 324 WP_316700887.1 DUF2917 domain-containing protein -
  RXV79_RS25230 (RXV79_25230) radA 5317276..5318634 (+) 1359 WP_316700888.1 DNA repair protein RadA Machinery gene
  RXV79_RS25235 (RXV79_25235) - 5318692..5319036 (+) 345 WP_316700890.1 hypothetical protein -
  RXV79_RS25240 (RXV79_25240) - 5319033..5319422 (+) 390 WP_316700892.1 hypothetical protein -
  RXV79_RS25245 (RXV79_25245) - 5319503..5319754 (+) 252 WP_296725614.1 FeoA family protein -
  RXV79_RS25250 (RXV79_25250) feoB 5319751..5321601 (+) 1851 WP_316700896.1 ferrous iron transporter B -
  RXV79_RS25255 (RXV79_25255) - 5321604..5321858 (+) 255 WP_316700897.1 DUF6587 family protein -
  RXV79_RS25260 (RXV79_25260) - 5321909..5322295 (+) 387 WP_316700899.1 hypothetical protein -
  RXV79_RS25265 (RXV79_25265) - 5322306..5322617 (-) 312 WP_316700900.1 PEP-CTERM sorting domain-containing protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 47668.95 Da        Isoelectric Point: 6.9498

>NTDB_id=890087 RXV79_RS25230 WP_316700888.1 5317276..5318634(+) (radA) [Piscinibacter gummiphilus strain SBD 7-3]
MSKTKSVYTCSECGGTSPKWLGKCPHCNAWNTLVEGVAEGTSKQHRFQSLAAPQPVATLSEIEATDVDRRATGIEELDRV
LGGGIVAGGVVLIGGDPGIGKSTLLLQALDALSQTVPTLYVTGEESGAQVALRSRRLGLDGSQVRVVAEINLEKISATLE
AEQPTVCVIDSIQTMYSEELTSAPGSVAQVRECAAQLVRIAKSSGTAIVLVGHVTKEGALAGPRVLEHIVDTVLYFEGDT
HSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVANPSAIFLSTHGEPVAGSCVLVTLEGTRPMLVEIQALVDSGGPSPRR
LSVGLDRDRLAMMLAVMHRHAGVAFMDQDVFVNAVGGVRISEPAADLAVMLAIQSSLRGKPLPRGFITFGEVGLAGEVRP
APRGQERLKEAAKLGFSVAIVPKANAPKKPIEGLTVHAVERIEQALDLVRTL

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=890087 RXV79_RS25230 WP_316700888.1 5317276..5318634(+) (radA) [Piscinibacter gummiphilus strain SBD 7-3]
GTGAGCAAAACCAAATCCGTCTATACCTGTAGCGAATGCGGGGGCACGAGCCCCAAGTGGCTGGGCAAGTGCCCGCATTG
CAATGCCTGGAACACGCTGGTCGAAGGCGTGGCCGAGGGCACATCCAAGCAGCACCGCTTCCAGTCGCTGGCCGCGCCGC
AGCCGGTGGCCACGCTGTCGGAGATCGAGGCGACCGACGTCGACCGGCGGGCCACGGGCATCGAGGAGCTCGACCGCGTG
CTCGGCGGCGGCATCGTTGCCGGTGGCGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAGTCGACGCTGCTGCTGCA
GGCGCTCGATGCGCTTTCGCAGACCGTGCCGACGTTGTACGTGACGGGCGAGGAGTCGGGCGCGCAAGTCGCCCTGCGCT
CGCGCCGCCTCGGGCTCGACGGCTCGCAGGTGCGCGTGGTCGCCGAGATCAACCTCGAGAAGATCAGCGCCACGCTGGAA
GCCGAGCAGCCCACCGTCTGCGTGATCGACTCGATCCAGACCATGTACAGCGAGGAGCTCACCTCGGCCCCCGGCTCGGT
GGCGCAGGTGCGTGAATGTGCGGCGCAACTGGTGCGCATCGCCAAGAGCAGTGGCACGGCCATCGTGCTGGTGGGCCACG
TCACGAAGGAAGGCGCGCTCGCCGGCCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTATTTCGAGGGCGACACG
CATTCGAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTCAATGAGATCGGCGTGTTCGCGATGACGGA
AAAGGGCCTGAAGGGCGTGGCGAACCCGAGCGCGATCTTCTTGTCGACGCACGGCGAGCCGGTGGCGGGCTCGTGCGTGC
TCGTCACGCTGGAAGGCACGCGGCCGATGCTGGTGGAGATCCAGGCGTTGGTCGACTCCGGTGGGCCCAGCCCGCGCCGC
CTCTCGGTCGGCCTCGACCGCGACCGCCTGGCGATGATGCTGGCGGTGATGCACCGCCATGCGGGTGTCGCCTTCATGGA
CCAGGACGTCTTCGTCAACGCGGTGGGCGGCGTGCGCATCAGCGAGCCGGCCGCCGACCTCGCGGTGATGCTGGCCATCC
AGAGCAGCCTGCGCGGCAAGCCGCTGCCGCGCGGCTTCATCACCTTCGGCGAAGTGGGCCTGGCCGGCGAGGTGCGCCCG
GCACCGCGCGGGCAGGAGCGGCTGAAGGAAGCCGCCAAGCTCGGCTTCAGCGTGGCCATCGTGCCCAAGGCCAATGCGCC
GAAGAAGCCGATCGAGGGGCTCACCGTGCACGCGGTCGAGCGCATCGAGCAGGCCCTCGACTTGGTGCGGACCCTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(347-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.491
  radA Streptococcus mitis NCTC 12261

46.98

98.894

0.465
  radA Streptococcus pneumoniae D39

48.821

93.805

0.458
  radA Streptococcus pneumoniae TIGR4

48.821

93.805

0.458
  radA Streptococcus mitis SK321

48.821

93.805

0.458
  radA Streptococcus pneumoniae R6

48.821

93.805

0.458
  radA Streptococcus pneumoniae Rx1

48.821

93.805

0.458