Detailed information NTG0890080

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RXV79_RS21440
• Genome accession: NZ_CP136336
• Coordinates: 4557561..4558679 (-)
• Length: 372 a.a.
• NCBI ID: WP_316700129.1
• Uniprot ID: -
• Organism: Piscinibacter gummiphilus strain SBD 7-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4552561..4563679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RXV79_RS21420 (RXV79_21420)	-	4554148..4554390 (-)	243	WP_296727662.1	PP0621 family protein	-
RXV79_RS21425 (RXV79_21425)	-	4554398..4555180 (-)	783	WP_316700126.1	inner membrane protein YpjD	-
RXV79_RS21430 (RXV79_21430)	ffh	4555275..4556684 (+)	1410	WP_316700127.1	signal recognition particle protein	-
RXV79_RS21435 (RXV79_21435)	-	4556790..4557548 (+)	759	WP_316700128.1	DUF2726 domain-containing protein	-
RXV79_RS21440 (RXV79_21440)	pilA	4557561..4558679 (-)	1119	WP_316700129.1	signal recognition particle-docking protein FtsY	Machinery gene
RXV79_RS21450 (RXV79_21450)	-	4558922..4559305 (+)	384	WP_316700130.1	hypothetical protein	-
RXV79_RS21455 (RXV79_21455)	miaB	4559318..4560691 (+)	1374	WP_316700131.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
RXV79_RS21460 (RXV79_21460)	-	4560688..4560966 (-)	279	WP_316700132.1	hypothetical protein	-
RXV79_RS21465 (RXV79_21465)	hemA	4561034..4562329 (+)	1296	WP_316700133.1	glutamyl-tRNA reductase	-
RXV79_RS21470 (RXV79_21470)	prfA	4562419..4563504 (+)	1086	WP_316700134.1	peptide chain release factor 1	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 39331.04 Da
• Isoelectric Point: 5.8317

>NTDB_id=890080 RXV79_RS21440 WP_316700129.1 4557561..4558679(-) (pilA) [Piscinibacter gummiphilus strain SBD 7-3]
MFSFFKKKPPAAEEPSPAPAAPAIETPPAAERASWLDRLRGTAPAPAPVAEPPAVAPAVPPAPAPEERASWLDKLRGGLR
KTGTSITRVFTGTQIDDALYDDLEEALLMADAGVKATEFLLNDLKRRVKDERATDPSEVKGLLADAISDLLKPLEKGLEV
GRHQPTVMMVVGVNGAGKTTSIGKLTRHLADSGQKVLLAAADTFRAAAREQLAVWAQRADLPGARRAVDIVSQESGDPAA
VSFDAVVAGKSRGCDVVIADTAGRLTTQAHLMDELKKIKRVIGKAQADAPHEVLLVVDGNTGQNALSQVKAFDDALQLTG
LIVTKLDGTAKGGVLAAIARERPIPVYFIGVGEKLEDLQTFDAREFAQALLS

Nucleotide

• Length: 1119 bp

>NTDB_id=890080 RXV79_RS21440 WP_316700129.1 4557561..4558679(-) (pilA) [Piscinibacter gummiphilus strain SBD 7-3]
ATGTTCAGCTTCTTCAAGAAAAAGCCGCCGGCTGCGGAGGAACCGTCGCCTGCACCCGCCGCCCCTGCGATCGAGACGCC
TCCTGCCGCAGAACGCGCGAGCTGGCTCGACAGGCTGCGCGGCACGGCGCCTGCACCTGCTCCCGTTGCCGAGCCTCCTG
CTGTCGCGCCCGCGGTGCCTCCAGCGCCTGCGCCAGAAGAGCGCGCCAGCTGGCTCGACAAGCTGCGCGGCGGCTTGCGC
AAGACCGGCACGAGCATCACCCGCGTCTTCACCGGCACGCAGATCGACGACGCGCTCTACGACGATCTTGAAGAGGCCCT
GCTGATGGCCGATGCCGGCGTCAAAGCGACAGAGTTCCTGTTGAACGACCTCAAGCGCCGTGTGAAAGACGAGCGCGCCA
CCGACCCTTCGGAGGTCAAGGGGCTGCTCGCCGATGCCATCTCCGATCTGCTCAAGCCGCTGGAGAAGGGCCTCGAGGTC
GGCCGCCACCAGCCGACCGTGATGATGGTCGTGGGCGTGAACGGCGCCGGCAAGACCACCAGCATCGGCAAGCTCACGCG
CCACCTGGCTGACAGCGGGCAGAAGGTGCTGCTCGCGGCGGCCGACACCTTTCGCGCCGCGGCGCGCGAGCAGCTCGCCG
TGTGGGCCCAGCGGGCCGACCTGCCCGGCGCGCGGCGGGCCGTCGACATCGTGAGCCAGGAGAGCGGCGACCCGGCCGCC
GTGAGCTTCGATGCCGTGGTCGCCGGCAAGTCGCGTGGCTGCGACGTGGTGATCGCCGACACCGCCGGCCGCCTCACCAC
CCAGGCCCATCTGATGGACGAGCTCAAGAAGATCAAGCGGGTGATCGGCAAGGCGCAGGCCGATGCGCCGCACGAGGTGC
TGCTCGTGGTCGACGGCAACACGGGCCAGAACGCCCTCTCGCAGGTGAAGGCCTTTGACGACGCCTTGCAACTCACCGGC
CTCATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTCGCCGCGATTGCGCGCGAGCGGCCGATTCCGGTCTA
CTTCATCGGTGTGGGCGAGAAGCTCGAAGACCTGCAGACCTTCGACGCGCGCGAGTTCGCGCAGGCTCTGTTGAGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (83-146)

• SRP54-type protein, GTPase domain (SRP54) (165-371)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	46.572	100	0.53