Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RXV79_RS01600 Genome accession   NZ_CP136336
Coordinates   334411..335931 (+) Length   506 a.a.
NCBI ID   WP_316701613.1    Uniprot ID   -
Organism   Piscinibacter gummiphilus strain SBD 7-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329411..340931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RXV79_RS01575 (RXV79_01575) argS 329841..331511 (+) 1671 WP_316701608.1 arginine--tRNA ligase -
  RXV79_RS01580 (RXV79_01580) - 331522..332166 (+) 645 WP_316701609.1 SPOR domain-containing protein -
  RXV79_RS01585 (RXV79_01585) - 332244..332894 (+) 651 WP_316701610.1 thiol:disulfide interchange protein DsbA/DsbL -
  RXV79_RS01590 (RXV79_01590) lptA 333023..333625 (+) 603 WP_316701611.1 lipopolysaccharide transport periplasmic protein LptA -
  RXV79_RS01595 (RXV79_01595) lptB 333622..334401 (+) 780 WP_316701612.1 LPS export ABC transporter ATP-binding protein -
  RXV79_RS01600 (RXV79_01600) rpoN/rpoN1 334411..335931 (+) 1521 WP_316701613.1 RNA polymerase factor sigma-54 Machinery gene
  RXV79_RS01605 (RXV79_01605) - 335944..337188 (+) 1245 WP_316701614.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  RXV79_RS01610 (RXV79_01610) - 337177..338556 (-) 1380 WP_316701615.1 HAMP domain-containing sensor histidine kinase -
  RXV79_RS01615 (RXV79_01615) - 338598..339770 (-) 1173 WP_316701616.1 MFS transporter -
  RXV79_RS01620 (RXV79_01620) - 339781..340497 (-) 717 WP_316701617.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 56318.51 Da        Isoelectric Point: 4.6527

>NTDB_id=890073 RXV79_RS01600 WP_316701613.1 334411..335931(+) (rpoN/rpoN1) [Piscinibacter gummiphilus strain SBD 7-3]
MKPSLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEANPFLEVEEDSGPAFEPMTERLSASEQAGERETERASE
VDSGGSDDTPGVDNVELGATERDDWENGTERDDFDGIREQPSSSSSSNNDNDDFDPHERNNVGESLQDHLHRQLLGMRLS
GEDTAAVKVLIESLNDDGYLDDPLEDIAASLAEGEEEREELLERLRCALKWLQNMEPLGVGARDLSECLSLQLRATPRCE
AQMIAIMICKQHLELLARRDLKKLMAATGADEDLIKEAQALIVTCEPKPGRQFARAEANIIVPDVIVQKAGRNWKVVLNP
EVMPKLRINDLYAQAIRGNRGAGGANGALSSRLQEARWFMKNIQQRFDTIQRVSQAIVERQKSFFTHGEIAMKPLVLREI
ADELGLHESTISRVTTAKYMATMFGTFELKYFFGSSLNTEAGGNASSTAVRALIKQLVAAEDTAKPLSDSQLSKMLEEQG
IQVARRTVAKYREALRIAPANLRKAM

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=890073 RXV79_RS01600 WP_316701613.1 334411..335931(+) (rpoN/rpoN1) [Piscinibacter gummiphilus strain SBD 7-3]
ATGAAGCCGTCCCTGCAGGTCCGCCTTTCCCAGCATCTCGCGCTCACGCCGCAACTGCAGCAGTCCATCCGGCTGCTGCA
ACTCTCGACGCTCGAGCTGCACCAGGAAGTCGAGCAGATGCTCGAGGCCAACCCCTTCCTTGAAGTGGAAGAGGACAGCG
GCCCCGCGTTCGAGCCGATGACCGAGCGCCTGAGTGCGTCCGAGCAGGCCGGCGAGCGCGAGACCGAGCGCGCCAGCGAA
GTCGACTCCGGCGGCAGCGACGACACCCCCGGCGTCGACAACGTCGAACTCGGTGCCACCGAGCGCGACGACTGGGAGAA
CGGCACCGAGCGCGACGATTTCGACGGCATCCGCGAGCAGCCGAGCAGCAGCTCGTCGAGCAACAACGACAACGACGACT
TCGACCCCCACGAGCGCAACAACGTCGGCGAGAGCCTGCAGGACCACCTGCATCGCCAGCTGCTGGGCATGCGCCTGTCC
GGCGAAGACACCGCCGCGGTGAAGGTGCTGATCGAGTCGCTCAACGACGACGGCTACCTCGACGATCCTCTGGAAGACAT
CGCCGCGAGCCTCGCCGAAGGCGAAGAGGAACGCGAAGAGCTGCTCGAGCGCCTGCGCTGCGCCCTCAAGTGGCTGCAGA
ACATGGAGCCGCTCGGCGTGGGCGCACGCGACCTCTCCGAATGCCTGTCGCTTCAGCTGCGCGCCACGCCGCGCTGCGAG
GCGCAGATGATCGCCATCATGATCTGCAAGCAGCACCTGGAGCTGCTCGCCCGGCGCGACCTGAAGAAGCTCATGGCCGC
CACCGGCGCCGACGAAGACCTCATCAAGGAAGCGCAGGCGCTGATCGTGACCTGCGAGCCCAAGCCCGGCCGCCAGTTCG
CGCGTGCCGAGGCCAACATCATCGTGCCCGACGTGATCGTGCAGAAGGCGGGTCGCAACTGGAAGGTGGTGCTCAACCCG
GAGGTGATGCCCAAGCTGCGCATCAACGACCTCTACGCACAGGCCATCCGCGGCAACCGCGGCGCGGGCGGTGCCAACGG
GGCTTTGAGCTCGCGTCTGCAGGAAGCGCGCTGGTTCATGAAGAACATCCAGCAGCGCTTCGACACCATCCAGCGTGTGA
GCCAGGCCATCGTCGAGCGCCAGAAGAGTTTCTTCACCCACGGCGAGATCGCGATGAAGCCGCTGGTGCTGCGCGAGATC
GCCGACGAGCTCGGCCTGCATGAGTCGACCATCTCGCGCGTGACCACCGCCAAGTACATGGCGACGATGTTCGGCACCTT
CGAGCTCAAGTACTTCTTCGGCTCCTCGCTCAACACCGAGGCCGGCGGCAACGCGTCGAGCACCGCGGTGCGGGCGCTCA
TCAAGCAGCTCGTGGCCGCCGAAGACACCGCCAAGCCGCTGTCGGACAGCCAGCTCTCGAAGATGCTCGAAGAGCAGGGC
ATCCAGGTGGCGCGACGCACGGTCGCGAAGTACCGCGAAGCGCTGCGCATCGCACCGGCCAACCTGCGAAAGGCGATGTG
A

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(350-504)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.578

100

0.547