Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RX793_RS17505 Genome accession   NZ_CP136263
Coordinates   3554868..3556598 (+) Length   576 a.a.
NCBI ID   WP_024085591.1    Uniprot ID   -
Organism   Bacillus velezensis strain 0039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3549868..3561598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS17480 (RX793_17450) - 3550269..3550523 (+) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -
  RX793_RS17485 (RX793_17455) - 3550513..3551403 (+) 891 WP_014305396.1 polyprenyl synthetase family protein -
  RX793_RS17490 (RX793_17460) dxs 3551547..3553448 (+) 1902 WP_024085592.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RX793_RS17495 (RX793_17465) - 3553445..3554290 (+) 846 WP_015388017.1 TlyA family RNA methyltransferase -
  RX793_RS17500 (RX793_17470) ahrC 3554387..3554836 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  RX793_RS17505 (RX793_17475) recN 3554868..3556598 (+) 1731 WP_024085591.1 DNA repair protein RecN Machinery gene
  RX793_RS17510 (RX793_17480) spoIVB 3556761..3558041 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  RX793_RS17515 (RX793_17485) spo0A 3558322..3559122 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  RX793_RS17520 (RX793_17490) alr 3559270..3560451 (-) 1182 WP_014305393.1 alanine racemase -
  RX793_RS17525 (RX793_17495) - 3560627..3560839 (-) 213 WP_014305392.1 spore germination protein -
  RX793_RS17530 (RX793_17500) - 3560965..3561177 (-) 213 WP_024085590.1 spore germination protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64052.80 Da        Isoelectric Point: 4.6753

>NTDB_id=890018 RX793_RS17505 WP_024085591.1 3554868..3556598(+) (recN) [Bacillus velezensis strain 0039]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYHEGYERYMELLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELQSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=890018 RX793_RS17505 WP_024085591.1 3554868..3556598(+) (recN) [Bacillus velezensis strain 0039]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGACGCGGCTCGTCCGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAACACTTGGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGGAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAACTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCTAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCCCT
GAAGAAGGAATTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCATGGGCCA
AGAAACTGGCGGAAGCGATTCATCAGGAATTACAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATCGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACGCATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGCATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.542

100

0.885