Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RX793_RS17010 Genome accession   NZ_CP136263
Coordinates   3473090..3473857 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain 0039     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3468090..3478857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS16980 (RX793_16950) - 3468373..3470505 (+) 2133 WP_003152972.1 HD family phosphohydrolase -
  RX793_RS16985 (RX793_16955) ybeY 3470506..3470979 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  RX793_RS16990 (RX793_16960) - 3470960..3471334 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  RX793_RS16995 (RX793_16965) - 3471458..3471868 (+) 411 WP_003152976.1 cytidine deaminase -
  RX793_RS17000 (RX793_16970) era 3471849..3472754 (+) 906 WP_003152978.1 GTPase Era -
  RX793_RS17005 (RX793_16975) - 3472910..3473053 (+) 144 WP_007408286.1 YqzL family protein -
  RX793_RS17010 (RX793_16980) recO 3473090..3473857 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  RX793_RS17015 (RX793_16985) glyQ 3474159..3475046 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  RX793_RS17020 (RX793_16990) glyS 3475039..3477078 (+) 2040 WP_024085617.1 glycine--tRNA ligase subunit beta -
  RX793_RS17025 (RX793_16995) ccpN 3477179..3477817 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  RX793_RS17030 (RX793_17000) - 3477843..3478655 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=890009 RX793_RS17010 WP_003152982.1 3473090..3473857(+) (recO) [Bacillus velezensis strain 0039]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=890009 RX793_RS17010 WP_003152982.1 3473090..3473857(+) (recO) [Bacillus velezensis strain 0039]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894