Detailed information NTG0889985

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RX793_RS11245
• Genome accession: NZ_CP136263
• Coordinates: 2369336..2370481 (-)
• Length: 381 a.a.
• NCBI ID: WP_024085922.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 0039
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2364336..2375481

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RX793_RS11220 (RX793_11215)	-	2364691..2365746 (+)	1056	WP_046341452.1	SagB/ThcOx family dehydrogenase	-
RX793_RS11225 (RX793_11220)	-	2365743..2367083 (+)	1341	WP_025853604.1	MATE family efflux transporter	-
RX793_RS11230 (RX793_11225)	-	2367084..2368511 (+)	1428	WP_046341451.1	DUF885 family protein	-
RX793_RS11235 (RX793_11230)	speB	2368673..2369110 (+)	438	Protein_2166	agmatinase	-
RX793_RS11240 (RX793_11235)	-	2369233..2369352 (-)	120	WP_131242041.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
RX793_RS11245 (RX793_11240)	rapF	2369336..2370481 (-)	1146	WP_024085922.1	Rap family tetratricopeptide repeat protein	Regulator
RX793_RS11250 (RX793_11245)	-	2370773..2371201 (+)	429	WP_003151069.1	DUF1934 domain-containing protein	-
RX793_RS11255 (RX793_11250)	argS	2371198..2372868 (+)	1671	WP_003151071.1	arginine--tRNA ligase	-
RX793_RS11260 (RX793_11255)	narK	2373002..2374192 (+)	1191	WP_003151073.1	nitrate transporter NarK	-
RX793_RS11265 (RX793_11260)	-	2374290..2375006 (+)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45768.27 Da
• Isoelectric Point: 5.0694

>NTDB_id=889985 RX793_RS11245 WP_024085922.1 2369336..2370481(-) (rapF) [Bacillus velezensis strain 0039]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=889985 RX793_RS11245 WP_024085922.1 2369336..2370481(-) (rapF) [Bacillus velezensis strain 0039]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTACGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACGCAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533