Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RX793_RS09290 Genome accession   NZ_CP136263
Coordinates   1990985..1991275 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain 0039     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985985..1996275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS09275 (RX793_09275) - 1986208..1987533 (-) 1326 WP_101312113.1 G5 and 3D domain-containing protein -
  RX793_RS09280 (RX793_09280) - 1987668..1988435 (-) 768 WP_004264700.1 TatD family hydrolase -
  RX793_RS09285 (RX793_09285) metG 1988511..1990502 (-) 1992 WP_412515151.1 methionine--tRNA ligase -
  RX793_RS09290 (RX793_09290) abrB 1990985..1991275 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  RX793_RS09295 (RX793_09295) rsmI 1991325..1992206 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RX793_RS09300 (RX793_09300) - 1992181..1992480 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  RX793_RS09305 (RX793_09305) - 1992467..1993210 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RX793_RS09310 (RX793_09310) yabA 1993271..1993630 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  RX793_RS09315 (RX793_09315) ricT 1993645..1994472 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  RX793_RS09320 (RX793_09320) holB 1994475..1995464 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  RX793_RS09325 (RX793_09325) - 1995476..1995916 (-) 441 WP_004264730.1 YaaR family protein -
  RX793_RS09330 (RX793_09330) darA 1995929..1996258 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=889979 RX793_RS09290 WP_169510469.1 1990985..1991275(+) (abrB) [Bacillus velezensis strain 0039]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=889979 RX793_RS09290 WP_169510469.1 1990985..1991275(+) (abrB) [Bacillus velezensis strain 0039]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979