Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RX793_RS04340 Genome accession   NZ_CP136263
Coordinates   995588..996166 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain 0039     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 990588..1001166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS04300 (RX793_04295) - 990830..991189 (+) 360 WP_003155160.1 hypothetical protein -
  RX793_RS04305 (RX793_04300) - 991310..991510 (+) 201 WP_003155162.1 DUF3311 domain-containing protein -
  RX793_RS04310 (RX793_04305) - 991507..992976 (+) 1470 WP_015388467.1 sodium:solute symporter family protein -
  RX793_RS04315 (RX793_04310) - 993017..993334 (+) 318 WP_003155166.1 YbjQ family protein -
  RX793_RS04320 (RX793_04315) - 993367..993636 (-) 270 WP_024085094.1 excalibur calcium-binding domain-containing protein -
  RX793_RS04325 (RX793_04320) - 993832..994542 (+) 711 WP_003155170.1 YrpD family protein -
  RX793_RS04330 (RX793_04325) - 994677..995048 (-) 372 WP_015388468.1 iron chaperone -
  RX793_RS04335 (RX793_04330) - 995075..995443 (-) 369 WP_003155175.1 iron chaperone -
  RX793_RS04340 (RX793_04335) comK 995588..996166 (-) 579 WP_003155179.1 competence protein ComK Regulator
  RX793_RS04345 (RX793_04340) - 996482..996715 (+) 234 WP_003155181.1 IDEAL domain-containing protein -
  RX793_RS04350 (RX793_04345) - 996746..997603 (-) 858 WP_024085092.1 SDR family oxidoreductase -
  RX793_RS04355 (RX793_04350) - 997728..999251 (+) 1524 WP_024085091.1 FAD-dependent oxidoreductase -
  RX793_RS04360 - 999167..999907 (+) 741 Protein_870 protoglobin domain-containing protein -
  RX793_RS04365 - 1000151..1000666 (+) 516 WP_369719112.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=889964 RX793_RS04340 WP_003155179.1 995588..996166(-) (comK) [Bacillus velezensis strain 0039]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=889964 RX793_RS04340 WP_003155179.1 995588..996166(-) (comK) [Bacillus velezensis strain 0039]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823