Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RX793_RS02255 Genome accession   NZ_CP136263
Coordinates   615154..615438 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain 0039     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 610154..620438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS02235 (RX793_02235) ade 610260..611993 (-) 1734 WP_024085251.1 adenine deaminase -
  RX793_RS02240 (RX793_02240) ktrC 612142..612807 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  RX793_RS02245 (RX793_02245) - 612848..613675 (-) 828 WP_024085250.1 gamma-glutamylcyclotransferase -
  RX793_RS02250 (RX793_02250) - 613677..614981 (-) 1305 WP_014304932.1 ATP-binding protein -
  RX793_RS02255 (RX793_02255) abrB 615154..615438 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RX793_RS02260 (RX793_02260) mreBH 615707..616714 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  RX793_RS02265 (RX793_02265) - 616786..616920 (+) 135 WP_003154559.1 protein YkpC -
  RX793_RS02270 (RX793_02270) - 617021..618253 (+) 1233 WP_024085248.1 aminopeptidase -
  RX793_RS02275 (RX793_02275) - 618283..619191 (-) 909 WP_024085247.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=889951 RX793_RS02255 WP_024085249.1 615154..615438(-) (abrB) [Bacillus velezensis strain 0039]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=889951 RX793_RS02255 WP_024085249.1 615154..615438(-) (abrB) [Bacillus velezensis strain 0039]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543