Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RX793_RS00975 Genome accession   NZ_CP136263
Coordinates   312616..313659 (-) Length   347 a.a.
NCBI ID   WP_003154145.1    Uniprot ID   Q659J5
Organism   Bacillus velezensis strain 0039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 307616..318659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS00955 (RX793_00955) spoVS 308099..308359 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  RX793_RS00960 (RX793_00960) - 308559..309353 (-) 795 WP_003154137.1 TIGR00282 family metallophosphoesterase -
  RX793_RS00965 (RX793_00965) rny 309414..310973 (-) 1560 WP_003154140.1 ribonuclease Y -
  RX793_RS00970 (RX793_00970) - 311266..312447 (-) 1182 WP_003154142.1 serine hydrolase domain-containing protein -
  RX793_RS00975 (RX793_00975) recA 312616..313659 (-) 1044 WP_003154145.1 recombinase RecA Machinery gene
  RX793_RS00980 (RX793_00980) cinA 313830..315080 (-) 1251 WP_024085307.1 competence/damage-inducible protein A Machinery gene
  RX793_RS00985 (RX793_00985) pgsA 315098..315679 (-) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RX793_RS00990 (RX793_00990) - 315754..316644 (-) 891 WP_024085306.1 helix-turn-helix domain-containing protein -
  RX793_RS00995 (RX793_00995) - 316663..317454 (-) 792 WP_003154149.1 DUF3388 domain-containing protein -
  RX793_RS01000 (RX793_01000) - 317582..317839 (-) 258 WP_024085305.1 DUF3243 domain-containing protein -
  RX793_RS01005 (RX793_01005) ymfI 317915..318643 (-) 729 WP_014305021.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37957.17 Da        Isoelectric Point: 4.6955

>NTDB_id=889947 RX793_RS00975 WP_003154145.1 312616..313659(-) (recA) [Bacillus velezensis strain 0039]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREYYGLDNNGVTDKAEEVQEEMELEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=889947 RX793_RS00975 WP_003154145.1 312616..313659(-) (recA) [Bacillus velezensis strain 0039]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGAGAAAAAACGGATACAAGAATTTCAACGGTGCCAAGCGGCTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTATACGGACCTGAAAGTTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCCGCATTTATTGATGCTGAGCATGCTCTTGATCCTGTTTACGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTTCTGCTTTCTCAGCCGGATACGGGAGAGCAGGCGCTTGAGATTGCTGAAGCGCTGGTGCGAAGCG
GAGCTGTTGATATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGATTCA
CACGTCGGTTTACAGGCGCGTCTTATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCTATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGCCGCGCGCTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCAGGGCAACGACGTGATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTGGATATCGTGCAAAAAAGCGGTTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGTCAGGGCCGTGAAAACGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAGGAACAA
ATCCGTGAATATTACGGTTTAGACAATAACGGTGTAACGGACAAAGCGGAAGAAGTTCAGGAAGAGATGGAATTAGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q659J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.839

100

0.971
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

94.236

0.706
  recA Streptococcus mutans UA159

66.092

100

0.663
  recA Streptococcus pneumoniae D39

68.485

95.101

0.651
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus pneumoniae Rx1

68.485

95.101

0.651
  recA Streptococcus pneumoniae R6

68.485

95.101

0.651
  recA Streptococcus pneumoniae TIGR4

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Helicobacter pylori 26695

63.265

98.847

0.625
  recA Helicobacter pylori strain NCTC11637

63.265

98.847

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.443

94.236

0.617
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Glaesserella parasuis strain SC1401

60.29

99.424

0.599
  recA Acinetobacter baylyi ADP1

59.71

99.424

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Acinetobacter baumannii D1279779

62.305

92.507

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.219

0.559