Detailed information NTG0889938

Bioinformatically predicted

Overview

• Name: sxy/tfoX
• Type: Regulator
• Locus tag: RXE34_RS15090
• Genome accession: NZ_CP136258
• Coordinates: 3023303..3023932 (-)
• Length: 209 a.a.
• NCBI ID: WP_000839162.1
• Uniprot ID: A0A2T3RS91
• Organism: Escherichia albertii strain ESA302
• Function: positive regulator of competence gene (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	3009394..3023732	3023303..3023932	flank	-429

Gene organization within MGE regions

Location: 3009394..3023932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RXE34_RS15020 (RXE34_15020)	-	3009457..3011937 (+)	2481	WP_102204099.1	exonuclease	-
RXE34_RS15025 (RXE34_15025)	-	3012004..3012255 (+)	252	WP_000273158.1	DUF4224 domain-containing protein	-
RXE34_RS15030 (RXE34_15030)	-	3012224..3013243 (+)	1020	WP_024227504.1	tyrosine-type recombinase/integrase	-
RXE34_RS15035 (RXE34_15035)	yccA	3013652..3014311 (+)	660	WP_000375136.1	FtsH protease modulator YccA	-
RXE34_RS15040 (RXE34_15040)	tusE	3014403..3014732 (+)	330	WP_059251577.1	sulfurtransferase TusE	-
RXE34_RS15045 (RXE34_15045)	yccX	3014729..3015007 (-)	279	WP_000048219.1	acylphosphatase	-
RXE34_RS15050 (RXE34_15050)	rlmI	3015101..3016291 (+)	1191	WP_059251552.1	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	-
RXE34_RS15055 (RXE34_15055)	hspQ	3016349..3016666 (+)	318	WP_001295356.1	heat shock protein HspQ	-
RXE34_RS15060 (RXE34_15060)	-	3016711..3017124 (-)	414	WP_002462360.1	CoA-binding protein	-
RXE34_RS15065 (RXE34_15065)	-	3017297..3017959 (+)	663	WP_000847777.1	DUF2057 family protein	-
RXE34_RS15070 (RXE34_15070)	mgsA	3018055..3018513 (+)	459	WP_000424182.1	methylglyoxal synthase	-
RXE34_RS15075 (RXE34_15075)	helD	3018545..3020599 (-)	2055	WP_000420534.1	DNA helicase IV	-
RXE34_RS15080 (RXE34_15080)	-	3020722..3021168 (+)	447	WP_001261228.1	YccF domain-containing protein	-
RXE34_RS15085 (RXE34_15085)	yccS	3021178..3023343 (+)	2166	WP_161527311.1	YccS family putative transporter	-
RXE34_RS15090 (RXE34_15090)	sxy/tfoX	3023303..3023932 (-)	630	WP_000839162.1	TfoX/Sxy family DNA transformation protein	Regulator

Sequence

Protein

• Length: 209 a.a.
• Molecular weight: 24291.21 Da
• Isoelectric Point: 9.0264

>NTDB_id=889938 RXE34_RS15090 WP_000839162.1 3023303..3023932(-) (sxy/tfoX) [Escherichia albertii strain ESA302]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide

• Length: 630 bp

>NTDB_id=889938 RXE34_RS15090 WP_000839162.1 3023303..3023932(-) (sxy/tfoX) [Escherichia albertii strain ESA302]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

• TfoX C-terminal domain (TfoX_C) (117-194)

• TfoX N-terminal domain (TfoX_N) (14-106)

3D structure

• AlphaFold DB: A0A2T3RS91

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sxy/tfoX	Escherichia coli BW25113 strain K-12	90.431	100	0.904