Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RW107_RS18835 Genome accession   NZ_CP136257
Coordinates   3637171..3637860 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain A9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3632171..3642860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS18800 (RW107_18800) flgN 3632351..3632833 (-) 483 WP_014481048.1 flagellar protein FlgN -
  RW107_RS18805 (RW107_18805) flgM 3632849..3633115 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  RW107_RS18810 (RW107_18810) yvyF 3633196..3633615 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  RW107_RS18815 (RW107_18815) comFC 3633689..3634411 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  RW107_RS18820 (RW107_18820) comFB 3634375..3634671 (-) 297 WP_003227989.1 late competence protein ComFB -
  RW107_RS18825 (RW107_18825) comFA 3634731..3636122 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  RW107_RS18830 (RW107_18830) fakBA 3636228..3637073 (-) 846 WP_003227986.1 DegV family protein -
  RW107_RS18835 (RW107_18835) degU 3637171..3637860 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RW107_RS18840 (RW107_18840) degS 3637943..3639100 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  RW107_RS18845 (RW107_18845) yvyE 3639317..3639970 (+) 654 WP_003227979.1 YigZ family protein -
  RW107_RS18850 (RW107_18850) tagV 3639970..3641145 (+) 1176 WP_128441886.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RW107_RS18855 (RW107_18855) tagO 3641218..3642294 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=889915 RW107_RS18835 WP_003219701.1 3637171..3637860(-) (degU) [Bacillus subtilis strain A9]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=889915 RW107_RS18835 WP_003219701.1 3637171..3637860(-) (degU) [Bacillus subtilis strain A9]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1