Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU45_RS12345 Genome accession   NZ_AP024873
Coordinates   2766665..2767183 (-) Length   172 a.a.
NCBI ID   WP_072956449.1    Uniprot ID   A0A1M4WNM9
Organism   Vibrio gazogenes strain ATCC 29988     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2761665..2772183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS12320 rimM 2761701..2762255 (-) 555 WP_072955936.1 ribosome maturation factor RimM -
  OCU45_RS12325 rpsP 2762278..2762526 (-) 249 WP_059121562.1 30S ribosomal protein S16 -
  OCU45_RS12330 ffh 2762704..2764071 (-) 1368 WP_072955934.1 signal recognition particle protein -
  OCU45_RS12335 - 2764323..2765117 (+) 795 WP_072955932.1 inner membrane protein YpjD -
  OCU45_RS12340 - 2765200..2766474 (+) 1275 WP_072955930.1 HlyC/CorC family transporter -
  OCU45_RS12345 luxS 2766665..2767183 (-) 519 WP_072956449.1 S-ribosylhomocysteine lyase Regulator
  OCU45_RS12350 gshA 2767333..2768934 (-) 1602 WP_072955929.1 glutamate--cysteine ligase -
  OCU45_RS12355 - 2769028..2771871 (-) 2844 WP_072955927.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18855.63 Da        Isoelectric Point: 4.6714

>NTDB_id=88991 OCU45_RS12345 WP_072956449.1 2766665..2767183(-) (luxS) [Vibrio gazogenes strain ATCC 29988]
MPLLDSFTVDHTRMNAPAVRVAKTMNTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLFAGFMRAHLNGNGVEIIDISP
MGCRTGFYMSLIGVPSEQRVADAWLAAMEDVLKVEDQNKIPELNIYQCGTAAMHSLDEAKDIAKAVISSGISVNQNDALA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=88991 OCU45_RS12345 WP_072956449.1 2766665..2767183(-) (luxS) [Vibrio gazogenes strain ATCC 29988]
ATGCCATTATTAGATAGTTTTACGGTGGATCATACACGTATGAATGCCCCTGCCGTTCGTGTTGCTAAAACAATGAATAC
CCCTAAAGGCGATACGATTACAGTGTTTGATTTACGCTTTACCGTGCCGAATCAAGATATCCTTTCCGAGAAAGGTATTC
ATACATTAGAACACTTATTTGCGGGCTTTATGAGAGCTCATCTCAATGGTAACGGCGTTGAAATTATTGATATTTCCCCA
ATGGGATGCCGGACAGGCTTCTACATGAGCTTAATTGGCGTGCCTTCTGAGCAGCGAGTCGCTGATGCTTGGTTAGCCGC
AATGGAAGATGTACTGAAGGTTGAAGACCAGAACAAGATTCCGGAATTAAATATTTATCAATGCGGAACTGCAGCGATGC
ACTCTCTGGATGAGGCGAAAGATATTGCTAAAGCTGTCATTTCAAGTGGTATCAGTGTGAATCAGAATGATGCTCTGGCG
CTACCAGAATCAATGCTTCAGGAACTGAAAGTGGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4WNM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment