Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RW107_RS16785 Genome accession   NZ_CP136257
Coordinates   3225683..3226327 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain A9     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220683..3231327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS16750 (RW107_16750) mrpB 3221875..3222306 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  RW107_RS16755 (RW107_16755) mrpC 3222306..3222647 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  RW107_RS16760 (RW107_16760) mrpD 3222640..3224121 (+) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  RW107_RS16765 (RW107_16765) mrpE 3224127..3224603 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  RW107_RS16770 (RW107_16770) mrpF 3224603..3224887 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  RW107_RS16775 (RW107_16775) mnhG 3224871..3225245 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  RW107_RS16780 (RW107_16780) yuxO 3225284..3225664 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  RW107_RS16785 (RW107_16785) comA 3225683..3226327 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  RW107_RS16790 (RW107_16790) - 3226408..3228720 (-) 2313 Protein_3251 histidine kinase -
  RW107_RS16795 (RW107_16795) comX 3228736..3228957 (-) 222 WP_014480704.1 competence pheromone ComX -
  RW107_RS16800 (RW107_16800) - 3228959..3229822 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  RW107_RS16805 (RW107_16805) degQ 3230007..3230147 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  RW107_RS16810 (RW107_16810) - 3230369..3230431 (+) 63 Protein_3255 hypothetical protein -
  RW107_RS16815 (RW107_16815) - 3230610..3230978 (+) 369 WP_041850584.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=889909 RW107_RS16785 WP_003220716.1 3225683..3226327(-) (comA) [Bacillus subtilis strain A9]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=889909 RW107_RS16785 WP_003220716.1 3225683..3226327(-) (comA) [Bacillus subtilis strain A9]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1