Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RW107_RS12330 Genome accession   NZ_CP136257
Coordinates   2431322..2432125 (-) Length   267 a.a.
NCBI ID   WP_128441713.1    Uniprot ID   -
Organism   Bacillus subtilis strain A9     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2426322..2437125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS12305 (RW107_12305) glpQB 2427458..2428189 (-) 732 WP_128441710.1 glycerophosphodiester phosphodiesterase -
  RW107_RS12310 (RW107_12310) yqiI 2428268..2428888 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  RW107_RS12315 (RW107_12315) - 2428908..2429204 (-) 297 WP_014480225.1 hypothetical protein -
  RW107_RS12320 (RW107_12320) - 2429512..2429664 (+) 153 WP_014480226.1 hypothetical protein -
  RW107_RS12325 (RW107_12325) yqiG 2429737..2430855 (+) 1119 WP_128441712.1 NADH-dependent flavin oxidoreductase -
  RW107_RS12330 (RW107_12330) spo0A 2431322..2432125 (-) 804 WP_128441713.1 sporulation transcription factor Spo0A Regulator
  RW107_RS12335 (RW107_12335) spoIVB 2432401..2433681 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  RW107_RS12340 (RW107_12340) recN 2433856..2435586 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  RW107_RS12345 (RW107_12345) argR 2435623..2436072 (-) 450 WP_003230265.1 arginine repressor ArgR -
  RW107_RS12350 (RW107_12350) yqxC 2436170..2437015 (-) 846 WP_128441715.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29718.21 Da        Isoelectric Point: 6.3913

>NTDB_id=889885 RW107_RS12330 WP_128441713.1 2431322..2432125(-) (spo0A) [Bacillus subtilis strain A9]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRNSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=889885 RW107_RS12330 WP_128441713.1 2431322..2432125(-) (spo0A) [Bacillus subtilis strain A9]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAACAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTTCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATCGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996