Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RW107_RS10545 Genome accession   NZ_CP136257
Coordinates   2123935..2125065 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain A9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2122570..2130650 2123935..2125065 within 0


Gene organization within MGE regions


Location: 2122570..2130650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS10535 (RW107_10535) - 2122570..2122944 (+) 375 WP_021481445.1 YoqO family protein -
  RW107_RS21825 - 2123725..2123802 (+) 78 WP_227057947.1 phage holin -
  RW107_RS10545 (RW107_10545) rapC 2123935..2125065 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  RW107_RS10550 (RW107_10550) - 2125055..2125198 (+) 144 WP_153801665.1 hypothetical protein -
  RW107_RS10555 (RW107_10555) - 2125352..2125552 (-) 201 WP_021481449.1 hypothetical protein -
  RW107_RS10560 (RW107_10560) - 2125774..2126148 (-) 375 Protein_2034 UV damage repair protein UvrX -
  RW107_RS10565 (RW107_10565) - 2126146..2126301 (-) 156 Protein_2035 T7SS effector LXG polymorphic toxin -
  RW107_RS10570 (RW107_10570) yobM 2126402..2126959 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  RW107_RS10575 (RW107_10575) aoxN 2127087..2128523 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  RW107_RS10580 (RW107_10580) csaA 2128773..2129105 (-) 333 WP_032725963.1 chaperone CsaA -
  RW107_RS10585 (RW107_10585) yobQ 2129170..2129895 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  RW107_RS10590 (RW107_10590) yobR 2129910..2130650 (-) 741 WP_041849922.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=889883 RW107_RS10545 WP_021481447.1 2123935..2125065(+) (rapC) [Bacillus subtilis strain A9]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=889883 RW107_RS10545 WP_021481447.1 2123935..2125065(+) (rapC) [Bacillus subtilis strain A9]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455