Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RW107_RS08115 Genome accession   NZ_CP136257
Coordinates   1561245..1561523 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain A9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556245..1566523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS08095 (RW107_08095) panEB 1557433..1558344 (+) 912 WP_041850871.1 ketopantoate reductase family protein -
  RW107_RS08100 (RW107_08100) ampS 1558378..1559610 (-) 1233 WP_041850870.1 aminopeptidase -
  RW107_RS08105 (RW107_08105) ykpC 1559719..1559853 (-) 135 WP_003238865.1 protein YkpC -
  RW107_RS08110 (RW107_08110) mreBH 1559954..1560961 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  RW107_RS08115 (RW107_08115) abrB 1561245..1561523 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  RW107_RS08120 (RW107_08120) kinC 1561713..1562999 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  RW107_RS08125 (RW107_08125) ykqA 1563015..1563842 (+) 828 WP_041850869.1 gamma-glutamylcyclotransferase -
  RW107_RS08130 (RW107_08130) ktrC 1563905..1564570 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  RW107_RS08135 (RW107_08135) ade 1564726..1566459 (+) 1734 WP_041850868.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=889878 RW107_RS08115 WP_003244728.1 1561245..1561523(+) (abrB) [Bacillus subtilis strain A9]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=889878 RW107_RS08115 WP_003244728.1 1561245..1561523(+) (abrB) [Bacillus subtilis strain A9]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGGGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576