Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RW107_RS07895 Genome accession   NZ_CP136257
Coordinates   1521309..1521773 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain A9     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1516309..1526773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS07875 (RW107_07875) kinA 1516776..1518596 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  RW107_RS07880 (RW107_07880) dapX 1518606..1519787 (-) 1182 WP_121591741.1 aminotransferase A -
  RW107_RS07885 (RW107_07885) - 1519989..1520150 (-) 162 WP_003245246.1 hypothetical protein -
  RW107_RS07890 (RW107_07890) cheV 1520354..1521265 (+) 912 WP_009967126.1 chemotaxis protein CheV -
  RW107_RS07895 (RW107_07895) kre 1521309..1521773 (-) 465 WP_003232406.1 YkyB family protein Regulator
  RW107_RS07900 (RW107_07900) ykuC 1521899..1523191 (-) 1293 WP_128441601.1 MFS transporter -
  RW107_RS07905 (RW107_07905) ltdD 1523267..1523761 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  RW107_RS07910 (RW107_07910) ppeE 1523818..1524678 (-) 861 WP_003232400.1 metallophosphoesterase -
  RW107_RS07915 (RW107_07915) fadH 1524821..1525585 (+) 765 WP_041850885.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=889876 RW107_RS07895 WP_003232406.1 1521309..1521773(-) (kre) [Bacillus subtilis strain A9]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=889876 RW107_RS07895 WP_003232406.1 1521309..1521773(-) (kre) [Bacillus subtilis strain A9]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGAGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1