Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RW107_RS05925 Genome accession   NZ_CP136257
Coordinates   1160032..1160610 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain A9     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155032..1165610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS21805 - 1155543..1156058 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  RW107_RS21810 - 1156299..1156925 (-) 627 Protein_1105 protoglobin domain-containing protein -
  RW107_RS05910 (RW107_05910) comW 1156980..1158509 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  RW107_RS05915 (RW107_05915) yhxC 1158621..1159478 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  RW107_RS05920 (RW107_05920) yhzC 1159506..1159739 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  RW107_RS05925 (RW107_05925) comK 1160032..1160610 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  RW107_RS05930 (RW107_05930) yhxD 1160657..1161556 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  RW107_RS05935 (RW107_05935) yhjA 1161773..1162042 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  RW107_RS05940 (RW107_05940) yhjB 1162086..1163555 (-) 1470 WP_029317574.1 sodium:solute symporter -
  RW107_RS05945 (RW107_05945) yhjC 1163552..1163752 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  RW107_RS05950 (RW107_05950) - 1163951..1164322 (-) 372 WP_014476361.1 hypothetical protein -
  RW107_RS05955 (RW107_05955) yhjE 1164474..1165097 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  RW107_RS05960 (RW107_05960) lepB 1165099..1165605 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=889864 RW107_RS05925 WP_029317573.1 1160032..1160610(+) (comK) [Bacillus subtilis strain A9]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=889864 RW107_RS05925 WP_029317573.1 1160032..1160610(+) (comK) [Bacillus subtilis strain A9]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995