Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RW107_RS04850 Genome accession   NZ_CP136257
Coordinates   968340..969134 (+) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain A9     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 963340..974134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS04820 (RW107_04820) sxzA 964179..965210 (+) 1032 WP_003233568.1 iron chelate uptake ABC transporter family permease subunit -
  RW107_RS04825 (RW107_04825) yfhB 965325..966206 (+) 882 WP_041851150.1 PhzF family phenazine biosynthesis isomerase -
  RW107_RS04830 (RW107_04830) yfhC 966294..966878 (+) 585 WP_015252518.1 NAD(P)H nitroreductase -
  RW107_RS04835 (RW107_04835) yfhD 966917..967108 (-) 192 WP_041851149.1 YfhD family protein -
  RW107_RS04840 (RW107_04840) yfhE 967175..967285 (-) 111 WP_003223230.1 YfhE family protein -
  RW107_RS04845 (RW107_04845) yfhF 967340..968251 (-) 912 WP_041851148.1 TIGR01777 family oxidoreductase -
  RW107_RS04850 (RW107_04850) recX 968340..969134 (+) 795 WP_029726844.1 recombination regulator RecX Regulator
  RW107_RS04855 (RW107_04855) yfhH 969136..969450 (+) 315 WP_003244592.1 YfhH family protein -
  RW107_RS04860 (RW107_04860) yfhI 969593..970786 (+) 1194 WP_021481165.1 MFS transporter -
  RW107_RS04865 (RW107_04865) sspK 970818..970970 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  RW107_RS04870 (RW107_04870) yfhJ 971095..971364 (+) 270 WP_003243789.1 YfhJ family protein -
  RW107_RS04875 (RW107_04875) yfhK 971509..972027 (+) 519 WP_085187167.1 SH3 domain-containing protein -
  RW107_RS04880 (RW107_04880) spdL 972112..972429 (+) 318 WP_021481164.1 SdpC immunity protein SpdL -
  RW107_RS04885 (RW107_04885) ephM 972431..973291 (+) 861 WP_085187170.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=889859 RW107_RS04850 WP_029726844.1 968340..969134(+) (recX) [Bacillus subtilis strain A9]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=889859 RW107_RS04850 WP_029726844.1 968340..969134(+) (recX) [Bacillus subtilis strain A9]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996