Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AAFA12_RS17195 Genome accession   NZ_CP151696
Coordinates   3564589..3564915 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain F19-10-MH12     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3559589..3569915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA12_RS17175 (AAFA12_17175) - 3559690..3560319 (-) 630 WP_000219964.1 FHA domain-containing protein -
  AAFA12_RS17180 (AAFA12_17180) gspD 3560360..3562636 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  AAFA12_RS17185 (AAFA12_17185) - 3562678..3563514 (-) 837 WP_000870031.1 type II secretion system protein N -
  AAFA12_RS17190 (AAFA12_17190) gspN 3563514..3564257 (-) 744 WP_000730343.1 type II secretion system protein N -
  AAFA12_RS17195 (AAFA12_17195) hns 3564589..3564915 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  AAFA12_RS17200 (AAFA12_17200) - 3565037..3565969 (-) 933 WP_000743272.1 IS5-like element IS17 family transposase -
  AAFA12_RS17205 (AAFA12_17205) - 3566158..3566598 (-) 441 WP_000661569.1 thioesterase family protein -
  AAFA12_RS17210 (AAFA12_17210) - 3566606..3567799 (-) 1194 WP_000681773.1 hypothetical protein -
  AAFA12_RS17215 (AAFA12_17215) - 3567809..3568648 (-) 840 WP_001230196.1 hypothetical protein -
  AAFA12_RS17220 (AAFA12_17220) - 3568657..3569424 (-) 768 WP_000897425.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=889776 AAFA12_RS17195 WP_000801427.1 3564589..3564915(-) (hns) [Acinetobacter baumannii strain F19-10-MH12]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=889776 AAFA12_RS17195 WP_000801427.1 3564589..3564915(-) (hns) [Acinetobacter baumannii strain F19-10-MH12]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1