Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU45_RS01175 Genome accession   NZ_AP024873
Coordinates   264909..265913 (+) Length   334 a.a.
NCBI ID   WP_072960550.1    Uniprot ID   A0A1M5D6A0
Organism   Vibrio gazogenes strain ATCC 29988     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 259909..270913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS01160 - 260400..261677 (-) 1278 WP_072960543.1 malic enzyme-like NAD(P)-binding protein -
  OCU45_RS01165 rpmE 261983..262204 (-) 222 WP_072960545.1 50S ribosomal protein L31 -
  OCU45_RS01170 priA 262455..264659 (+) 2205 WP_072960601.1 primosomal protein N' -
  OCU45_RS01175 cytR 264909..265913 (+) 1005 WP_072960550.1 DNA-binding transcriptional regulator CytR Regulator
  OCU45_RS01180 ftsN 266031..266579 (+) 549 WP_072960553.1 cell division protein FtsN -
  OCU45_RS01185 hslV 266722..267261 (+) 540 WP_038178732.1 ATP-dependent protease subunit HslV -
  OCU45_RS01190 hslU 267306..268637 (+) 1332 WP_072960556.1 HslU--HslV peptidase ATPase subunit -
  OCU45_RS01195 - 268821..269738 (+) 918 WP_072960558.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU45_RS01200 rraA 269814..270377 (+) 564 WP_072960604.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36706.32 Da        Isoelectric Point: 6.6914

>NTDB_id=88977 OCU45_RS01175 WP_072960550.1 264909..265913(+) (cytR) [Vibrio gazogenes strain ATCC 29988]
MATMKDVAQLAGVSTATVSRALMNPEKVSPTTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEVVNYLTQMGHKKIGEIAGPDSAALCHFRHQGYMQALRRAGITMNPAYHYKGDFSFEAGVKAIRLLLGLSEPPGA
VFCHNDMMAIGAIQEAKRLGVRVPQDLSVVGFDDINFAQYCDPPLTTVSQPRYEIGRQAMLMMLEVLRGHDVRAGSRLLE
TKLVIRESVAAPRG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=88977 OCU45_RS01175 WP_072960550.1 264909..265913(+) (cytR) [Vibrio gazogenes strain ATCC 29988]
ATGGCGACAATGAAGGATGTTGCTCAACTAGCGGGAGTGTCAACCGCGACCGTATCTAGGGCGTTGATGAATCCCGAAAA
AGTGTCGCCTACGACAAGAAAACGGGTTGAAGATGCAGTTCTTGAAGCCGGATACTCTCCGAATTCACTGGCACGAAATT
TAAGACGTAACGAATCAAAGACGATTGTTGCGATCGTTCCTGATATCTGTGATCCATACTTCACTGAAATTATCCGAGGT
ATCGAGGATGCTGCTGTCGAGCACGGTTATTTAGTGTTACTTGGTGATAGCGGCCAACAGAAGAAACGTGAAAGTTCTTT
TGTGAATCTGGTCTTTACCAAGCAAGCCGACGGCATGCTACTGCTTGGTACCGATTTACCGTTTGATGTCAGTAAGTCAG
AACAGAAAAACTTACCACCGATGGTGATGGCCTGCGAGTACGCACCAGAGCTGGAATTGCCGACTGTCCATATTGATAAT
CTGACTTCTGCGTTTGAAGTGGTTAATTATCTCACTCAGATGGGGCATAAAAAGATTGGTGAAATTGCCGGCCCCGATTC
AGCGGCTTTGTGTCATTTCCGTCATCAGGGATATATGCAGGCTTTAAGACGTGCCGGCATTACGATGAATCCTGCTTATC
ATTACAAAGGTGATTTCAGCTTTGAAGCGGGTGTGAAAGCGATTCGGCTCCTTCTCGGATTGTCCGAGCCTCCGGGCGCT
GTTTTTTGCCACAATGACATGATGGCTATCGGTGCCATTCAAGAAGCGAAACGCTTAGGTGTCAGAGTGCCTCAGGATCT
GTCAGTGGTTGGTTTCGACGATATCAACTTTGCTCAGTATTGTGATCCACCGTTAACGACTGTCTCTCAGCCTCGGTATG
AGATTGGCCGTCAGGCGATGCTAATGATGTTAGAAGTGCTCCGGGGGCATGATGTTCGGGCGGGCTCTCGTTTGCTGGAA
ACAAAATTGGTGATTCGTGAAAGTGTGGCAGCTCCTCGCGGATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5D6A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

87.952

99.401

0.874
  cytR Vibrio parahaemolyticus RIMD 2210633

85.285

99.701

0.85

Multiple sequence alignment