Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU28_RS15380 Genome accession   NZ_AP024872
Coordinates   811366..812469 (-) Length   367 a.a.
NCBI ID   WP_261817766.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 806366..817469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS15365 - 807447..807764 (-) 318 WP_261817763.1 DUF6693 family protein -
  OCU28_RS15370 - 807801..808763 (-) 963 WP_261817764.1 hypothetical protein -
  OCU28_RS15375 - 808837..811362 (-) 2526 WP_261817765.1 LuxQ periplasmic sensor domain-containing protein -
  OCU28_RS15380 luxP 811366..812469 (-) 1104 WP_261817766.1 substrate-binding domain-containing protein Regulator
  OCU28_RS15385 - 812466..812753 (-) 288 WP_261817767.1 GIY-YIG nuclease family protein -
  OCU28_RS15390 - 812766..813404 (-) 639 WP_261817768.1 YceH family protein -
  OCU28_RS15395 - 813622..813936 (+) 315 WP_261817769.1 DUF496 family protein -
  OCU28_RS15400 - 814071..814667 (+) 597 WP_261817770.1 pentapeptide repeat-containing protein -
  OCU28_RS15405 - 814720..815427 (+) 708 WP_261817771.1 class I SAM-dependent methyltransferase -
  OCU28_RS15410 - 815416..816363 (-) 948 WP_261817772.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 41961.96 Da        Isoelectric Point: 9.5304

>NTDB_id=88973 OCU28_RS15380 WP_261817766.1 811366..812469(-) (luxP) [Vibrio gallicus strain CIP 107863]
MKWRAILLLIVGCVVSLPMCAKQSLNFRDYWDYQAYLTAHPTQAKLTAQMAERVYTTAVPIQTSPNKPIRIDVVYPGTQL
SDYWWRNIKALKLRLQELGIAYEINQYSTRPNLDHKQQSRSLLQVLKNESDYLIFTLDTSEHRKFAYRVLNEQKTKLILL
NITTPIKSWQEHRPLMYVGFDHVLGSQMLAQHYQFLFPNSANYGLVYFSPGYISEARGDTFIKQMQQADKYTLKRAYYTQ
ANKASAYTATQSMFKQQPELDFVYASSTDVAFGVVDALGDLHRSGVVVNGWGGGASELKAIKQGRLDFTVMRMTDDTGIA
MAEAIKLDLEGQPVPQVYSGDYRLISKQNSSAYITGLERRAFRYSNQ

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=88973 OCU28_RS15380 WP_261817766.1 811366..812469(-) (luxP) [Vibrio gallicus strain CIP 107863]
ATGAAATGGCGAGCAATACTACTGCTTATTGTCGGTTGTGTTGTCTCGCTACCGATGTGCGCCAAACAGAGCCTTAATTT
TCGTGATTACTGGGATTATCAAGCGTATCTAACTGCACACCCAACTCAAGCCAAACTCACTGCGCAAATGGCAGAGCGGG
TTTATACTACGGCTGTCCCTATCCAAACCTCACCTAATAAGCCAATTCGAATCGATGTTGTTTATCCTGGTACGCAATTA
TCCGATTATTGGTGGCGTAATATCAAAGCCCTGAAATTGCGTTTACAAGAACTTGGGATTGCCTATGAGATCAATCAGTA
TTCAACGCGCCCAAACCTAGATCACAAACAGCAGAGCCGTAGCCTTTTGCAGGTATTAAAGAATGAATCGGATTATCTGA
TTTTTACCCTAGATACCAGTGAGCATCGAAAATTTGCTTATCGGGTGTTAAATGAGCAAAAGACCAAGCTTATTTTGTTG
AATATCACTACGCCAATAAAATCATGGCAAGAGCATCGCCCCCTAATGTATGTCGGTTTTGACCATGTACTGGGTAGCCA
AATGTTGGCACAGCACTATCAATTCTTATTCCCAAATTCAGCTAACTATGGCTTGGTTTATTTCTCTCCTGGTTATATTA
GTGAAGCGCGGGGAGATACCTTCATCAAGCAGATGCAACAGGCAGACAAATACACACTCAAGCGGGCGTATTACACGCAA
GCAAACAAGGCGTCGGCCTACACGGCAACCCAATCTATGTTTAAACAACAGCCTGAATTGGATTTTGTGTATGCAAGTTC
AACCGATGTAGCGTTTGGTGTAGTAGACGCTTTAGGTGATCTACACAGATCGGGTGTTGTTGTAAATGGCTGGGGCGGCG
GGGCATCTGAATTAAAGGCAATAAAGCAGGGCAGGCTTGATTTTACGGTTATGCGAATGACCGATGATACGGGGATTGCG
ATGGCTGAGGCAATCAAGCTAGATTTAGAGGGACAGCCTGTACCGCAGGTGTATTCAGGGGATTACAGGTTGATATCTAA
ACAGAATTCTTCTGCGTATATAACCGGTCTTGAACGTCGCGCCTTTCGTTATTCAAATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(80-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

52.394

96.73

0.507

Multiple sequence alignment