Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   RWA07_RS08715 Genome accession   NZ_CP136183
Coordinates   1805278..1805658 (+) Length   126 a.a.
NCBI ID   WP_000836912.1    Uniprot ID   A0AAP1R0C8
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1800278..1810658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS08685 (RWA07_08685) kdsB 1801181..1801942 (+) 762 WP_125268213.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RWA07_RS08690 (RWA07_08690) - 1801954..1802934 (+) 981 WP_016654157.1 DNA polymerase III, delta' subunit -
  RWA07_RS08695 (RWA07_08695) - 1802946..1803287 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  RWA07_RS08700 (RWA07_08700) - 1803305..1804078 (+) 774 WP_000497298.1 TatD family hydrolase -
  RWA07_RS08705 (RWA07_08705) - 1804116..1804724 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  RWA07_RS08710 (RWA07_08710) - 1804734..1805288 (+) 555 WP_000841368.1 type II secretion system protein -
  RWA07_RS08715 (RWA07_08715) xcpV 1805278..1805658 (+) 381 WP_000836912.1 type II secretion system minor pseudopilin GspI Machinery gene
  RWA07_RS08720 (RWA07_08720) xcpW 1805658..1806359 (+) 702 WP_031993939.1 type II secretion system minor pseudopilin GspJ Machinery gene
  RWA07_RS08725 (RWA07_08725) gspK 1806359..1807318 (+) 960 WP_317857608.1 type II secretion system minor pseudopilin GspK -
  RWA07_RS08730 (RWA07_08730) - 1807548..1808144 (+) 597 WP_000908452.1 6-pyruvoyl trahydropterin synthase family protein -
  RWA07_RS08735 (RWA07_08735) ung 1808195..1808908 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  RWA07_RS08740 (RWA07_08740) - 1808905..1810029 (+) 1125 WP_153603799.1 enoyl-CoA hydratase/isomerase family protein -
  RWA07_RS08745 (RWA07_08745) tadA 1810036..1810539 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13965.16 Da        Isoelectric Point: 9.8004

>NTDB_id=889659 RWA07_RS08715 WP_000836912.1 1805278..1805658(+) (xcpV) [Acinetobacter baumannii strain ABO21-A001]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYSVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=889659 RWA07_RS08715 WP_000836912.1 1805278..1805658(+) (xcpV) [Acinetobacter baumannii strain ABO21-A001]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATTCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992