Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   RWA07_RS01940 Genome accession   NZ_CP136183
Coordinates   414708..416936 (-) Length   742 a.a.
NCBI ID   WP_046127844.1    Uniprot ID   A0A429LL67
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409708..421936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS01920 (RWA07_01920) - 409893..410849 (-) 957 WP_001107916.1 DnaJ C-terminal domain-containing protein -
  RWA07_RS01925 (RWA07_01925) - 411000..411611 (-) 612 WP_004836228.1 LysE family translocator -
  RWA07_RS01930 (RWA07_01930) - 411749..412624 (-) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  RWA07_RS01935 (RWA07_01935) - 412790..414631 (-) 1842 WP_004836225.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  RWA07_RS01940 (RWA07_01940) priA 414708..416936 (-) 2229 WP_046127844.1 primosomal protein N' Machinery gene
  RWA07_RS01945 (RWA07_01945) gspF 417085..418290 (+) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  RWA07_RS01950 (RWA07_01950) gspG 418314..418895 (+) 582 WP_000865312.1 type II secretion system major pseudopilin GspG -
  RWA07_RS01955 (RWA07_01955) - 419162..419506 (+) 345 WP_004836221.1 hypothetical protein -
  RWA07_RS01960 (RWA07_01960) - 419650..419988 (+) 339 WP_000434938.1 tRNA-binding protein -
  RWA07_RS01965 (RWA07_01965) lnt 419990..421549 (-) 1560 WP_001203093.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83970.82 Da        Isoelectric Point: 8.5662

>NTDB_id=889646 RWA07_RS01940 WP_046127844.1 414708..416936(-) (priA) [Acinetobacter baumannii strain ABO21-A001]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDLQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCENCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=889646 RWA07_RS01940 WP_046127844.1 414708..416936(-) (priA) [Acinetobacter baumannii strain ABO21-A001]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACTTGA
TTGGTATCATTACTGAAAAAGTTGACCTACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCAATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGTCCATCCCCTGTGCAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCGTTTTTGTTGGATGGTTTAACCGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGGTTAAATGACTCTA
AACGCCTACAGGCATGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTGATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
TCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCGCTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCTTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAATTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAGAGTCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCCTAGTTGCTATTTTAGACATCGATGCAGGTTTACTGAGTGTCGATATTCGGGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGTCATGTTTATTTACAAACCTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGGCCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTTCATGCGCCAAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429LL67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.978

100

0.98