Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AAFA13_RS04995 Genome accession   NZ_CP151690
Coordinates   1042252..1043640 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain F19-10-CH8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037252..1048640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA13_RS04970 (AAFA13_04970) fdhD 1037687..1038478 (+) 792 WP_000187635.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  AAFA13_RS04975 (AAFA13_04975) - 1038598..1038990 (+) 393 WP_000119199.1 YkvA family protein -
  AAFA13_RS04980 (AAFA13_04980) - 1039095..1040162 (+) 1068 WP_000706070.1 4-phosphoerythronate dehydrogenase -
  AAFA13_RS04985 (AAFA13_04985) epmA 1040159..1041133 (+) 975 WP_000059551.1 EF-P lysine aminoacylase EpmA -
  AAFA13_RS04990 (AAFA13_04990) - 1041192..1042169 (-) 978 WP_000451848.1 Tim44-like domain-containing protein -
  AAFA13_RS04995 (AAFA13_04995) radA/sms 1042252..1043640 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  AAFA13_RS05000 (AAFA13_05000) - 1044130..1045536 (+) 1407 WP_000070815.1 amino acid permease -
  AAFA13_RS05005 (AAFA13_05005) - 1045677..1045901 (+) 225 WP_001255198.1 lipoprotein -
  AAFA13_RS05010 (AAFA13_05010) lysA 1045924..1047174 (+) 1251 WP_000011145.1 diaminopimelate decarboxylase -
  AAFA13_RS05015 (AAFA13_05015) dapF 1047180..1048025 (+) 846 WP_000923485.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=889506 AAFA13_RS04995 WP_000048860.1 1042252..1043640(-) (radA/sms) [Acinetobacter baumannii strain F19-10-CH8]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=889506 AAFA13_RS04995 WP_000048860.1 1042252..1043640(-) (radA/sms) [Acinetobacter baumannii strain F19-10-CH8]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAACCCACCACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGTGAA
TTTGACCGAGTGCTTGGCGGTGGTTTGGTAACAGGTTCTGTAGTACTCATTGGTGGTGACCCAGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCGCTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGCGCCCAACGCCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACGGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGTGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATATTTTTAAGTCGTTATGACGAAGCCATTC
CCGGTTCAATTGTCATGATCAGCCGTGAAGGAACTCGCCCGCTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGTGG
TGTACAAACCACCGGACAAGACGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTACGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGTCTTTCA
GGTGAAATCCGACCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGGTTTAAATACGTCATCTTACC
AAGAGGTAACGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCTTGCATGAAGCCTTGACTGAGG
CGATGCAACTCAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422