Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU46_RS19825 Genome accession   NZ_AP024867
Coordinates   1421352..1422866 (+) Length   504 a.a.
NCBI ID   WP_141269153.1    Uniprot ID   A0A4Y3IJ45
Organism   Vibrio comitans strain LMG 23416     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416352..1427866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS19800 - 1416854..1417186 (+) 333 WP_141269162.1 STAS domain-containing protein -
  OCU46_RS19805 - 1417240..1418067 (+) 828 WP_141269160.1 OmpA family protein -
  OCU46_RS19810 - 1418054..1420138 (+) 2085 WP_141269158.1 SLBB domain-containing protein -
  OCU46_RS19815 - 1420138..1420821 (+) 684 WP_141269156.1 CpsD/CapB family tyrosine-protein kinase -
  OCU46_RS19820 - 1420879..1421319 (+) 441 WP_141269155.1 Hpt domain-containing protein -
  OCU46_RS19825 luxO 1421352..1422866 (+) 1515 WP_141269153.1 sigma-54-dependent transcriptional regulator Regulator
  OCU46_RS19830 - 1422844..1423953 (+) 1110 WP_141269151.1 glycosyltransferase family 4 protein -
  OCU46_RS19835 - 1424076..1425308 (+) 1233 WP_141269149.1 glycosyltransferase -
  OCU46_RS19840 - 1425298..1426458 (+) 1161 WP_141269147.1 glycosyltransferase -
  OCU46_RS19845 - 1426455..1427858 (+) 1404 WP_141269145.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55444.57 Da        Isoelectric Point: 5.6861

>NTDB_id=88944 OCU46_RS19825 WP_141269153.1 1421352..1422866(+) (luxO) [Vibrio comitans strain LMG 23416]
MEPKVLLVEDSNSLAILYKQYVKDEPYDLFHVETGKDAKRFIEHHAPQLVILDLKLPDTTGEEILDWIKENEIPCSVIIA
TAHGSVNTAVNLIQKGADDFLEKPITADRLKTSVALHLKRTKLESLVSKLETKFDRPNFHGFIGSSLPMQAVYKIIESAA
PTTASVFINGESGTGKEVCAEALHKQSKRADKPFVALNCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMELEMQKKLLRFLQTGSVTPLGGSKELKADVRIICATNKDPLKEIEAGRFREDLYYRVHVIPIELPPLRERDKDI
ATLAKHFVKLYSKQDGKGFTGLSAEVESILKAYPWPGNVRQLQNIMRNVVVLNDGTKVEANQLPPPLNAVNPAKPVAVAT
PSPAVIAQQSPPAIVAPPPTENLASTEETVPVETIQAASSVNTEGTDTFAVRPMWQVEKETIQNAIKVCDGNVLNAAVML
ELSPSTVYRKKQQWETEDDLQVSE

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=88944 OCU46_RS19825 WP_141269153.1 1421352..1422866(+) (luxO) [Vibrio comitans strain LMG 23416]
ATGGAACCAAAAGTACTACTAGTCGAGGACTCTAACTCACTAGCCATACTCTATAAACAGTATGTTAAAGACGAGCCATA
CGATCTCTTTCATGTAGAGACAGGCAAGGATGCTAAGCGATTTATAGAGCATCATGCTCCGCAATTGGTCATTCTTGATC
TCAAGCTTCCCGACACCACCGGGGAGGAGATACTTGATTGGATAAAGGAAAATGAAATCCCCTGCTCTGTGATCATCGCC
ACCGCTCACGGTTCGGTGAATACTGCCGTAAATCTGATCCAAAAAGGCGCAGACGATTTTCTCGAAAAGCCAATTACCGC
GGACAGATTAAAGACATCAGTAGCGCTGCACCTCAAGCGTACCAAACTAGAAAGTTTGGTTAGTAAGTTAGAGACTAAGT
TTGATAGACCTAACTTCCACGGTTTTATCGGCTCTAGCTTACCTATGCAAGCCGTTTACAAGATCATTGAGTCTGCAGCC
CCTACCACGGCTAGCGTATTTATTAACGGTGAAAGTGGTACCGGTAAAGAAGTCTGTGCAGAAGCCCTACATAAACAGAG
CAAGCGCGCTGATAAACCCTTTGTCGCCCTTAACTGTGGTGCAATCCCAAGAGACTTAATGGAAAGTGAGATCTTTGGGC
ATGTTAAAGGAGCCTTTACTGGCGCGACAACCGACCGAAAAGGCGCAGCAATGCAAGCCCATGGTGGCACTTTGTTCCTC
GACGAATTGTGCGAAATGGAACTTGAGATGCAGAAAAAGCTGCTGCGCTTTTTACAAACCGGCAGTGTCACCCCGCTAGG
TGGTAGCAAAGAACTAAAAGCGGACGTGCGAATCATCTGCGCGACCAACAAAGATCCTCTGAAAGAGATTGAGGCTGGTC
GCTTCCGTGAAGATCTCTATTATCGAGTGCATGTAATCCCAATTGAGCTTCCCCCTTTGCGCGAAAGAGACAAAGATATC
GCTACTCTAGCAAAGCATTTTGTGAAGCTTTACTCAAAGCAAGATGGAAAAGGGTTTACTGGATTATCTGCAGAGGTGGA
ATCAATCCTCAAGGCTTACCCTTGGCCTGGCAATGTTAGGCAACTGCAAAATATCATGCGAAACGTTGTGGTTCTCAATG
ATGGCACTAAGGTTGAAGCAAACCAACTTCCCCCGCCTCTTAACGCAGTTAACCCAGCTAAACCTGTAGCAGTAGCAACG
CCATCTCCTGCAGTTATTGCTCAACAATCACCACCAGCAATTGTGGCACCACCACCCACCGAGAACTTAGCTTCCACGGA
AGAAACTGTGCCCGTAGAGACGATACAAGCTGCTAGCTCAGTAAATACTGAAGGAACTGACACCTTCGCGGTAAGACCTA
TGTGGCAAGTTGAAAAAGAAACGATCCAAAACGCCATCAAGGTATGTGATGGCAATGTATTAAATGCCGCTGTGATGCTT
GAGCTAAGCCCATCTACTGTTTATCGTAAAAAACAACAGTGGGAAACAGAAGATGACTTACAAGTCAGCGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(454-490)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3IJ45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.898

97.421

0.486

Multiple sequence alignment